Array 1 207266-207537 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYU01000014.1 Salmonella enterica subsp. enterica serovar Poona str. 2010K-2244 NODE_17_length_236648_cov_63.514992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207266 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 207327 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 207388 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 207449 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 207510 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223682-225482 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARYU01000014.1 Salmonella enterica subsp. enterica serovar Poona str. 2010K-2244 NODE_17_length_236648_cov_63.514992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223682 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 223743 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 223804 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 223865 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 223926 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 223987 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 224048 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 224109 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 224170 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 224231 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 224293 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 224354 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 224415 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 224476 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 224537 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 224598 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 224659 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 224720 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 224781 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 224842 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 224903 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 224964 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 225025 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 225086 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 225147 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 225209 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 225270 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 225331 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 225392 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 225453 29 96.6 0 ............T................ | A [225480] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //