Array 1 35626-36653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMO010000007.1 Anaerostipes hadrus strain DFI.4.30 APJHOGKK_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 35626 32 100.0 33 ................................ ATCTAACAGATATTTGCTTTCTCCTCCAGCAAG 35691 32 100.0 36 ................................ AGAAGATGTCAGAAAGTCCATGGAAGATGAAACAAC 35759 32 100.0 33 ................................ TCAATCAACGGAAGTGATGCACCACCAGGATTT 35824 32 100.0 33 ................................ AACATCTCGTAGCTTTCCGTACTGACCTCTTAC 35889 32 100.0 34 ................................ TGCCATTGTTTCCTCCTAACTTATCGTAATTGTT 35955 32 100.0 34 ................................ CTATCCTCCTATCATTTTTAACAGTGTTTTATAA 36021 32 100.0 35 ................................ TTCTTAATTGGATCAATAAATGGTCGTTTTGCCAT 36088 32 100.0 33 ................................ ACTTTTCCTCCGGATTTCATAATTTTGAATGCA 36153 32 100.0 34 ................................ AAGTGAGGTTGTAAGATTAAGGTTCCCCAAATTT 36219 32 100.0 35 ................................ AATGTGTGGACTTACAATAGATTCAAGGCTGAAAG 36286 32 100.0 35 ................................ CTGTCACAAGTTTTGCAAAATCTTCTACAGATTCC 36353 32 100.0 35 ................................ TATACAACGCATCGGTTGTACCTTGCTAAATACCC 36420 32 100.0 37 ................................ AATGTAATGAGCAGGAATCCATGTTGCACCAAGTTGT 36489 32 96.9 35 ........T....................... AAATCATACAAAGTAAAAGTAACTGCTTCTGCTCT 36556 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCCACTT 36622 32 75.0 0 .............CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.2 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACTTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGACAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : TATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGCGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGATGAGAAAATATATTAACGAGGAGATAAGAAATTTAATATCAACTCATAAATTTCCTAATATCTTCCAAAATAAAAGTAAATTCGATAACATGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1104-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMO010000008.1 Anaerostipes hadrus strain DFI.4.30 APJHOGKK_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1103 30 93.3 36 C.....G....................... CAAGCTTTCAAGAACTAAATCTAATAAACTTAACTG TAA [1085] 1034 30 100.0 36 .............................. ATTAGTTCGCATCGTTTTGACTGCTCCCGTTGCAAG 968 30 100.0 34 .............................. CACTTAGGAAACTACAGGACAGCCTGATTCCAAT 904 30 100.0 35 .............................. AAATAAGAATTTATCGAACAGATCTGTTTTGACAG 839 30 100.0 38 .............................. TGGCGGAACTGTATAATGTTTAGAAAGGGGTGTAGATA 771 30 100.0 37 .............................. ATGCACCCAGTTTTGTATCATGAATTTCTAAACCATC 704 30 100.0 38 .............................. TGCTTTGAAAAGCTCTGGAAACAGTACCCGAATAAACG 636 30 100.0 36 .............................. CCGATGGCTCTTTCCTTCCATGCGGATCACATTCAC 570 30 100.0 36 .............................. GTAAATGCAAAACATTGCACTGACACTTTTGAAGTT 504 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 36 ATTTAAATTCCATTATGATTCTATTAATTC # Left flank : CTGATGCGAAATTGCAGATTTTGTTACCCCAAGTAGCACTGCAAGATCACATACACACATCTCACTCTGTTCTAGAGCGTGTAAGATTTGTACTCTAGTTCCATCTCCAAATAGCTTAAACAAAGAAGCCAACTGGATATAATCATCTTTTGGCTGCATCTTGGATTTCACATCATTCACAATATCCTCATGAATTACATTGCAATTACAAATATAAGACGTTTTTGGCATATATTCACCTCCAAATAATAATAGTTGAACAACTACTCAACTATTATTATACTTATTTTTAAATTTATGTCAATAAGCTGATGTTAGTTCCCCATAAATTTTACAATTAAAACCAGCTCTTTATTCTTTTCTTTATCACATCTCATTTCTGGATTAAACGCTTATTTTAATTATCAGATTTTTCCTTCTAATCTATATTCTTAAGGTTCCAGTTGACTCATTTGGTCCCAAGTGCCTTAAGATTTCCAACCTGTTACATTGAAATCCAT # Right flank : CCCGTCCCAAAATCATCCCCTTATTTAAGCCAAAAAACGTCTCTATTTTGTCGACCTCTTCAAAATTCAACATTTCTTTCTTGTCCCTAATCATATATTTCTGCAACACCTCCTATTTTAGGCGTTTCCGCCTTCTGTCGATCCCCTATATTTTTTGCACTATCAGGGGTCGACAGAAACCCCTAATTTTTCAAGTTGATTTTGTTCGACACATTCTATTATGAAACTTATTTGCTAAATATGCAAGTTAAATACACGCATTCATTATATATACTTTTCGAGCAAACACTATACAGTCATATATGCATCAAATATCACCGTCTGAATAATCCAATTTATCGTCATTTTTATAAAAGTCATGCCCACGCGAGAAAATTTCCGTGGGCATGACGTGGGCACAGCTATTTTTAGGCTTATTTTCAATCAAAACCACCGGCTTAGCCGGTGGTTTGTACTAGCCCTATAAGGGCTTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCCATTATGATTCTATTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //