Array 1 288686-289039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTX01000009.1 Listeria monocytogenes strain SHL12-22 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 288686 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 288752 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 288815 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 288879 29 96.6 37 A............................ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 288945 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [288968] 289011 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTTCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATTGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 305334-308601 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTX01000009.1 Listeria monocytogenes strain SHL12-22 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 305334 29 100.0 34 ............................. CCATCCACGTGGACGGGACTTCTTTTACATCAAT 305397 29 100.0 36 ............................. TCAGCAAACCAATCCATTCAAGACGCCTTTGTGTTT 305462 29 100.0 35 ............................. TAGTATCTCACTTCAAAACTATCTGTGTCACTATT 305526 29 100.0 36 ............................. CAAGAAGCACGTAAGATGTTTGTAGCACCAGACAAC 305591 29 100.0 38 ............................. CAAAAAGAAGTCGTATCTGAAAATAGCAAAGCACCTCA 305658 29 100.0 37 ............................. GACACTCATTTTTGCTGCTTGCTTACTAGTGACCTTT 305724 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTACTGAAAGT 305789 29 100.0 34 ............................. CCTGAAATGGGGGCTTTTTTGTGATGAAAAACAC 305852 29 100.0 35 ............................. TGGTATAAATCTAAAAATACACAAGTTGTAAATGT 305916 29 100.0 35 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAA 305980 29 100.0 36 ............................. CTAAAAAAGATTGGCAGAATGGAAATGTGTATGTGT 306045 29 100.0 34 ............................. CCATTACGTTTGCCTTGTTGTTAAAGCTTGCAAC 306108 29 100.0 35 ............................. AGCTGTAGCACCTTTCTGCAATCTTTCAGCCTCAT 306172 29 100.0 35 ............................. AAAGTAAATGCCGTAGAAACGTCCTCACAACCACA 306236 29 100.0 35 ............................. ACAAGTGGCTTAATATAAAACGTTGGTGCTGTGGG 306300 29 100.0 35 ............................. TGATAACCGTCAAATAAGTCAGTGTCAACTTCGTC 306364 29 100.0 35 ............................. GTTGTTTTTTATGTTTAGCATCCATAGTCGTAAGG 306428 29 100.0 36 ............................. TTCGAAAAGTCTGTTTTGCCCTATGTCTAATCCTTT 306493 29 100.0 34 ............................. ACATTCGAAGTGGAGTGGCAACAAAAGCCTTATA 306556 29 100.0 37 ............................. AAGTTAATTATTGAATGCTATCCAGAAAGAATAGAAG 306622 29 100.0 36 ............................. GTGCTTAAAACGATGACAAAAGTAGGAATAACATCA 306687 29 100.0 36 ............................. TTGCTTATAGAAGCTTATTTGTCTATTATTACCAGC 306752 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 306817 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 306883 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 306947 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCTGTTTTCAATTATT 307012 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 307076 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 307140 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 307205 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 307270 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 307336 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 307401 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 307466 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 307530 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 307594 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 307660 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 307725 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 307791 29 100.0 36 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAAC 307856 28 96.6 34 .....-....................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 307918 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 307983 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 308050 29 100.0 37 ............................. ATTACTTAATTCTAGTTACGTTGCTGCGTTTACTTCT 308116 29 100.0 35 ............................. AAATTTTTTGTTGATAAGCATGCAGGAGCAAATAA 308180 29 100.0 37 ............................. CAGTGATTATGCTAAGACCTACACAATCGTTATCACT 308246 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 308311 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 308376 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 308442 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 308506 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 308572 29 93.1 0 .......................A....C | C [308595] ========== ====== ====== ====== ============================= ====================================== ================== 51 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGTGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGCTTCTGCCATTCCAGCTCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //