Array 1 5119-3101 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEE01000007.1 Staphylococcus agnetis strain SNUC 719 contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5118 36 100.0 31 .................................... TAAGAAGTACCGTATCAGTAACAACCCCTTT 5051 36 100.0 30 .................................... ATAATAATCCGAATAACGCGATAAACTTCG 4985 36 100.0 30 .................................... GTTATACGCCTTTATATCGTCGTTTTAACT 4919 36 100.0 30 .................................... AATTGTCATTACAACTACACCTAACACTTG 4853 36 100.0 30 .................................... GTATCCACAAAAAGATTCCTACCCTATCCA 4787 36 100.0 30 .................................... TTAATTTTGTCATCAACTTCACTCGGCTTA 4721 36 100.0 30 .................................... AGCAATTGCTTCTTCACGGCTAACAGACCT 4655 36 100.0 30 .................................... ATCAGAAATCGGCAAAGTTTCTTTAGGCAT 4589 36 100.0 29 .................................... TTTACTAGGCAGAATATTAACATGCATGT 4524 36 100.0 30 .................................... GCAAATGGTATAGATGAAAGCTTGATAAGA 4458 36 100.0 30 .................................... GCAAATGGTATAGATGAAAGCTTGATAAGA 4392 36 100.0 30 .................................... TGCTAAAGCACTTGCCATATTTTATATCCA 4326 36 100.0 31 .................................... GAATTTATGCTACAAAAGGCAGTAGAGCGCA 4259 36 100.0 30 .................................... ATTTCGATAACTATTTGACTTTGAGGGTCA 4193 36 100.0 30 .................................... CGAGAATGGGAAGATGTCGCCAATGTAAGT 4127 36 100.0 30 .................................... GCCATTGCTTTGGCACGTTGTAAATCACGT 4061 36 100.0 30 .................................... CGAACACCAAAGAGGCGCAATGGGCGAATC 3995 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 3929 36 100.0 31 .................................... GCGCAAGAAAAGTTATATATGAACGAGCTTT 3862 36 100.0 30 .................................... TGAGTTTGATAACAAAACGCAAGCTGCTAA 3796 36 100.0 30 .................................... GTATTGCTAGTGGTGGTGGTATCTATGATT 3730 36 100.0 30 .................................... AGATCAAGCACAGCACATTTGTTTATAACC 3664 36 100.0 30 .................................... TGGAAGAAAACTAATAATCCAACTAAACAC 3598 36 100.0 30 .................................... TGACGTTAGGTAATGAAGTTTTAGCTAACA 3532 36 100.0 30 .................................... ATTTTCAATAACTTCTTTAGCTTTACTAAT 3466 36 100.0 30 .................................... GCAACCGCTTTATTGTATCTGTCTTCCATA 3400 36 100.0 30 .................................... CCTGCAAGATTTTTCTCTAACTCTGATTTG 3334 36 100.0 29 .................................... TGAAGTATAGGGAGGGCACGCACATGCTT 3269 36 100.0 31 .................................... CATCACGGCTGATACAATACTACGTGCTTGG 3202 36 100.0 30 .................................... TGGTAACCTTGCAACACGTGGCACAGTACA 3136 36 80.6 0 .........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.4 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTCGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGGTCACATCTAATCCTTTACAATCTTATTATATGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGATTGGTGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : TGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCCATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATATTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTACCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGACAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //