Array 1 971417-972602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051317.1 Salmonella enterica subsp. enterica serovar Newport strain CVM 34530 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 971417 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 971478 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 971539 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 971600 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 971661 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 971722 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 971783 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 971844 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 971905 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 971966 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 972027 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 972088 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 972149 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 972210 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 972271 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 972332 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 972393 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 972454 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 972515 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 972575 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 989272-990887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051317.1 Salmonella enterica subsp. enterica serovar Newport strain CVM 34530 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 989272 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 989333 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 989394 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 989455 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 989516 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 989577 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 989638 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 989699 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 989760 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 989821 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 989882 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 989943 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 990004 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 990065 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 990126 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 990187 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 990248 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 990309 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 990370 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 990431 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 990492 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 990553 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 990614 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 990675 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 990736 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 990797 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 990858 29 100.0 0 ............................. | A [990885] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //