Array 1 48749-49875 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_KI911334.1 Paracoccus sp. J55 ParJ55DRAFT_scaffold_22.23, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     48749	    29	 100.0	    32	.............................	AAGACGGCTCTGATCTCTTCTCCAGGAATTCC 	
     48810	    29	 100.0	    32	.............................	TAGAGACGTGTGCCCAGGAAGATGGGGGTGGA 	
     48871	    29	  96.6	    32	............................A	GCCCGACGTGATCTGCATGGAGAATGTCGAGG 	
     48932	    29	 100.0	    33	.............................	GCTGACCGCCGCCCTAGACGACGAGCGGGCGCA	
     48994	    29	 100.0	    32	.............................	GTGATCCGCGCTCCTGACCACCCCGAGGCGAA 	
     49055	    29	 100.0	    32	.............................	CATCGGCGAGACGGTCGAGACGCCGCCGCCGA 	
     49116	    29	 100.0	    32	.............................	AGGCCAAGGCATTCCTTGACGCGTCCTACAAC 	
     49177	    29	 100.0	    32	.............................	GCCAGCGTGCCGCACCGGATCGGCCGCGAGGA 	
     49238	    29	 100.0	    32	.............................	GTCAGGCGGCAGAACGCAGCAGTAGCCATGTC 	
     49299	    29	 100.0	    32	.............................	CAGCGGATAGAGGCTGCTCGTCGCCTGTTCCC 	
     49360	    29	 100.0	    32	.............................	CAGGCCCAGAAGTCCGGATGTGTCGATCCCCG 	
     49421	    29	 100.0	    32	.............................	TCGTTGTATCGCTCCACCTGAAGGAAGCTCAC 	
     49482	    29	 100.0	    32	.............................	GGCTCCGGCCCGGCCAGTTACGTCCATCACAG 	
     49543	    29	 100.0	    32	.............................	CTCGTCGCAGCCTGCCCCGACGACCGCTTGAA 	
     49604	    29	 100.0	    32	.............................	AAAAAAGTGTCGGCGGGGCCGGGCCGAATGGC 	
     49665	    29	 100.0	    32	.............................	TTTTACCCCACTGACTGGCGGTCTGATCCCGC 	
     49726	    29	 100.0	    32	.............................	ATGAGAACGCACCGCCAGCGTCACCACAATGC 	
     49787	    29	 100.0	    32	.............................	GAGGAGCTGCAAGGCATCGCCGGCCAGATCGA 	
     49848	    28	  93.1	     0	.................-..........A	|                                	
==========	======	======	======	=============================	=================================	==================
        19	    29	  99.5	    32	CTGTTCCCCGCACGCGCGGGGATGAACCG	                                 	       

# Left flank :   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGC
# Right flank :  ACAGCATCCCAGTCCGGCTGAAGGCGCCGTGCCGACTTTTCTGATGGGGCAAGAAGAATACGGCGCAGCTCGTGATCGGAGGCGCCGGGAAGAGCTTTTTCAGTTAATCCCGCTGCTGCCGCGCGACGACGCATCTTGCGAACCATATCGCGGTGCTTGAACGCGCACCGCAAGTGCAAGCCAACCGAACGGTTCGAGGCTCGTGAAGCAGCCGAACTCCGACCGCTGCCGGAAGCACCCTATGATTACGGCGCTTGGAAAGCCGGCATCAAGTTCCAGCGCCATTATCGCGTTAATGTCGATGGTCGTGACTACAGCGTGCCTTACCGCCTCATCGGCGAGGCCGTGAGCATCAAGACGACCGCCGCGACTGTCAAAATCTATCCGATTCATCGCTCGTCGCCGTTCGCGCCTGCCGGATCGTCACACCGCAGGATGATGCCCCGGTCATCGATCCCGCGCATATGCCTGAAATCCATCGCGCCATGTGGCGCCAGAAC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGTTCCCCGCACGCGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [3.3-41.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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