Array 1 18473-16889 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJL01000023.1 Ornithobacterium rhinotracheale strain LMG 19032 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 18472 47 100.0 30 ............................................... AATTTTTAAGTACACTTTAACCCTTATTTA 18395 47 100.0 30 ............................................... ATGGAATATAAAAGAATAAAAAACGATGTA 18318 47 100.0 30 ............................................... AATTACCTCTGATTAAGATTTTCAAACTTA 18241 47 100.0 29 ............................................... TTTGTGGGTCTCTACAATCATCACGACTT 18165 47 100.0 30 ............................................... GAGAAGGTATATTTAGTATACCTGCAAGTA 18088 47 100.0 30 ............................................... TTCATTACTGAAAAATTATCATTTAGAGTA 18011 47 100.0 30 ............................................... TTCATTACTGAAAAATTATCATTTAGAGTA 17934 47 100.0 30 ............................................... TTCATTACTGAAAAATTATCATTTAGAGTA 17857 47 100.0 30 ............................................... AAATCTTTGGTAGAGGAAGCATTAAAGAGA 17780 47 100.0 29 ............................................... CAATCGTTGTAACTTTTGTTACTTGTTAC 17704 47 100.0 30 ............................................... AATCTAACCCCACACGATTATAACAACAAT 17627 47 100.0 30 ............................................... ACTACGGTACAAGTTAAGTATATCAATGTA 17550 47 100.0 30 ............................................... TTACAAGGTATGGTCATTTGTTAACACCAA 17473 47 100.0 30 ............................................... CGAAGCTTAATAAATTTGAAAAGGTACCGA 17396 47 100.0 29 ............................................... TAATTATTTGGTTAAACATTGTGGCGTAG 17320 47 100.0 30 ............................................... CATCGCTGATGAAATAAATGCTATGAGAAT 17243 47 100.0 30 ............................................... AACTTAATAGATCAGCTTTTAGCTTTCCAA 17166 47 100.0 30 ............................................... AATAAAGGTACTTACCCCTGCGACTGGGTG 17089 47 100.0 30 ............................................... CGATAAATGTAGTGCTGGTATTTGCCAAAG 17012 47 100.0 30 ............................................... AAAAAGGTGAACGTGATTGTTTTGAAAACA 16935 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 100.0 30 GTTGTAATTAGGTTTCAAATTATTATTTTTGTAGGATTAGTTACAAG # Left flank : GACAAAGTCAATGAAATTACGAATTATCAATATTTTGCTTGCGAGTTCTATGCTCGTTGCGTGTAAAAATACTGCGGAAACGATTACAAATCTTAGCCCATCGGAATCGGAAGTCGTAAAAGATTCTACAGCGACAGATTCCATCTCGGTAGTTCCTGATGATGATACAAATACTGAGTCAATGGATGAAGATTTAATCGATCCGGAAACGGGGAAAATCAAAGATTTAGATGCGTATGTGGCGAAGCTGCTATCTGCGCCTGGTGTTGAGCCTATTAAGGGGTATAGATTTAGCATTGAAGGTGATTTTGATGGAGATGGCCAAAAAGAAAAATTGACAGAGCATTATTTTTCTGGAAAAACAAACAAAGAAACCAACAAATTCTATAAGGGCTTAAAGTATTATGATTTTATAACTGTGGTGGTGAATAAAAAGCCGTATTGTTTTATGACATCGAGCAATCCTGCAATGCAATCACTTCCTGTTTCAGATAATAAGC # Right flank : ATACTCCTTGTTTCTTTCTGTAAATCAAAAAGTTGAAAAGGTTGCTAGGATTGTAGAAATCTGCAACCTTTTTTTATTTGAAATAAATTTTTGATGATTTTTTTAATTTTAGAAAAGTTCCAATTGCTGGTACATGGGTGGTTTTTCCACCTCTTTGGTACTATGGAATATTTCTGTCATACCGAATTGTTTGTCGGTGATTCTAAAAATGGCTACACGCCCATGTTTGGGTAAAATGTCTTTTACTCGCTTTATATGCACTTCTGTGTTTTCTCGGCTTGAGCAGAATCGCATATAAATCGAAAATTGAAACATAGAGAATCCATCTTCTAGCAATTGTTTTCTAAATTTGCTAGCTCTTTTACGGTCGAGCTTGGTTTCCGTAGGCAGGTCAAATGATACAAGAATCCACATAGAGCGATATTGGTTTAAGCGAGTGAAAAGTTCTTCCATAGGTTTAGCAAAATTCAGGATAAGCGATTTTTCTTCTAGTGCCTTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTAGGTTTCAAATTATTATTTTTGTAGGATTAGTTACAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.60%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //