Array 1 69611-68972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYE010000046.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69610 29 96.6 32 ............................A TTTGAAGTTGATGATGGTCGTAAATTCTACCC 69549 29 100.0 32 ............................. ATATGTACGATGAGACAGGGTGTGATAACAAC 69488 29 100.0 32 ............................. ATTTATCGCAATCAAAATGGCGATGAAATCAC 69427 29 100.0 32 ............................. GAGGTGAGAAGACTAGATACACACTCTTGTCA 69366 29 100.0 32 ............................. CTGTAAAAGTAGCCCATACATTTGACGCATTT 69305 29 100.0 32 ............................. AATACTGACTATCGTTTTATCGAGTGTTTGAA 69244 29 100.0 32 ............................. CCTGAAACGTTACTATCACACAATTAAGTTAC 69183 29 100.0 32 ............................. TACATGCTCTTTTGCTCTATCGACTATCAAGA 69122 29 96.6 32 ............................A ACGAACCGGGTTTTTGTGGTAACACATACTCA 69061 29 100.0 32 ............................. AAACAAAAACAGCACTAGAAATGTCAGAGCGT 69000 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : | # Right flank : TGATGGCCTTGGCCTTATTCGCTCGTTCCACTGAGGTAGAACGCCACTGACTTATCGTGCTTATGATATATTAGTGTTACCGTCATGTAAGAAAACGTTGACTCAGACTCACAAAAATACATGTGTATGATTGCGCTTGTTGCGTCATCAATAAACGCCAATAACGTGCATTCGTCAGCTCATCCTTCAAACCAATAATGGGGTGAACCATCGACTTGAGCTAGCACACCCAAACAATCACTCCTTGCGCAAGGTTGGTATACTTTCCTACACTTTTTCTGTTTTGGCATCCAAAGGTTGTTAGTAATCACCCATTGACGAACCGCCTCGCCTGATAAATATATACTATTGATTTATAATGCTTTTTAAGCAATTTAATTAAGGCAAAAATCATAGTGATGTATTTGGATTAACTCCAGAACTAGGGATTTAAGGAGGAAGCAATACTGATGGTTCCCTGGTCGGGTTCGCTGCTTAGAAATAAGTCCTTGAAGACCAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : GTGTTCCCTATACCCATAGGGATGAACCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 763-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYE010000058.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 762 29 100.0 33 ............................. CTCTGAACGCTGCTTGCGTAGTGTGTCGTTATA 700 29 100.0 32 ............................. CTGGTGCGTCAACCCTTGCTAGTGCTGTTATC 639 29 100.0 32 ............................. ATACGGTTTTGCATCATCTTCATGACGAATTT 578 29 100.0 32 ............................. TTGAACTTTCTTTGCTGAGTTATGAATTCAAG 517 29 100.0 32 ............................. ATAATACTAAATAATTAAATGTGTCATTATAA 456 29 100.0 32 ............................. ATACTTTGCATTTGTCGCCGTAGTTGAATTTG 395 29 100.0 32 ............................. CCTCGCGCTCTTGTAATAAAAGAATCTTGCGA 334 29 100.0 32 ............................. TATGTAAATACTTCAAAACCCTTTCCACCGCC 273 29 100.0 32 ............................. AGTGCTGAATCTCATCTATTGATGCGTACCCA 212 29 100.0 32 ............................. CGTAAATCCAACATTGTACGATCATGACGAAC 151 29 100.0 32 ............................. TAGAGATAATAAAATAGGGCTAACGTCCATAT 90 29 100.0 32 ............................. AGCTACTATCGATGTGATATGGTCTTTTATCA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : ACTCATCGATGAAGTACTCAGTGCGGGAGATATTACACCTCCTGAACCTTATATAGATGCACAACCTCCTGCTATACCAGAGCCAATTACGATTGGTGATTTTGGTCATCGGAGCCAATGATCTCATGAGTATGTTAGTTGTAGTAACGGAAGCCGTACCACCGCGTCTGAGAGGGCGTCTTGCTGTTTGGTTATTAGAAGTCAGAGCGGGTGTATATATAGGGAATGTTTCTAGAAGAGTCAGGGAAATGATTTGGGAACAAATTGAATGTCTTACTGAAGATGGCAATGTTGTAATGGCATGGGGAACTAATACCGAATCTGGCTTTGATTTTCAAACCTATGGCAAAAATCGTCGAGAGCCTGTTGATTTAGATGGGTTACGGTTAGTGAAATTTTTACCTGCTGATATGATAACTGAATGAAAAAATGTTCTTTAAAATGTTGGTAGATTTTTAATGATAGTGTTTTACCTTATAAATCAATAAGATATTTTTAGA # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11069-9698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXYE010000058.1 Photobacterium damselae subsp. damselae strain CDC-1421-81 Contig_000058, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11068 29 100.0 32 ............................. CATTAACAACTTTATTCCATCAGTTGTTTCTC 11007 29 100.0 32 ............................. CTAACAACCTGTTGGAGCGACATATCGGATTC 10946 29 100.0 32 ............................. TCGATTTCAGAGGGAGGACAGGCCACACGATA 10885 29 100.0 32 ............................. TATGACCGCATTGTTTGACGATCCCGAAGTGC 10824 29 100.0 32 ............................. TTTTGCCCTGCAAAGGCTGCGTGTCCCGAAAA 10763 29 100.0 32 ............................. GTTTCTTCTTACTTGTCGGCGTGTTATTCGTA 10702 29 100.0 32 ............................. TAATCTCGGGTATGTGCAAGGAATTCGTTCGT 10641 29 100.0 32 ............................. ATCATCAGGATCATTAATGTCATAGTCTGGTA 10580 29 96.6 32 ............................A TAATCATTGGTACCCATTTGGCTAATTTTATC 10519 29 100.0 32 ............................. ATAGCTTGTCTTACTTGCTCTGACATTTCACG 10458 29 100.0 32 ............................. TCAGAAACGTATTCGACTAACGTAGTATTAAA 10397 29 100.0 32 ............................. GCAGTTAAAACCCTTATTTCACGCCTTGAGGC 10336 29 100.0 32 ............................. AAATCAAGAACTACTCAGAGAGTACGGAAACA 10275 29 100.0 32 ............................. GGTTATGAGTAATATTGTTGAATTCGTTAAGG 10214 29 100.0 32 ............................. ATGCTGGTTAACTGGCATCATCACCTAATGGC 10153 29 100.0 32 ............................. AACAAAAAGAATGGACAGGTAACCAAATACGG 10092 29 100.0 32 ............................. TGGTAATGTTTAATATCGCGTTATTTGTCATA 10031 29 100.0 32 ............................. AATTGCGGTTTGAACTGAAACGATTTGCTCAC 9970 29 100.0 32 ............................. ATAAGACGGTTGGTGATGTTCTAACGGGTAGT 9909 29 100.0 32 ............................. GGGCCGTGTATATCGCGTACTGCGTGGACCGC 9848 29 100.0 32 ............................. CGCACCGTCTGAATATTTTTTTGACTTAGTGC 9787 29 100.0 32 ............................. ATGTTCGCAGACACAGAAGACGATGAAAAGGT 9726 29 86.2 0 ...................A....GGG.. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 GTGTTCCCTATACCCATAGGGATGAACCG # Left flank : ACACTGCATGCGTCATAGGCTGATCTGCCACCACAATCACCACCCCTTTTTCCATGATGCGGGCTTTTAAAGTTTTCCATTCAAACCATGGTAAACGAGTAAGGCGATCCATTTTTTCAATCAGCAACACATCACCGGTTTCGCTGTCGTCGATCAACTTGTTGAGTTCTGGCCGTTCTAACTTGGTGCCGGATTGGTTTTCGATGTAATAGCCAGCAATACGAAAATTGAACTTAGCGCCAAAGGCTTTCAGTTCTTCTTTTGCCCGTTGGGCATCTTGCTCGGAGGTTGAGGCACGAAGGTAAGCACGGATCAGCATGATTTCCCCTAAACTGGTTTAATTTAAGTTAGTTTCTAAAATAAGTTTAGTATAAATGGTTTCTCAAATGAAGCGGCAAGGGTTGAGAGGCGGTGGGAAGTGGTTTCGTTAGGGTATACCTAAAAGTTGGTAAAAATTTCCCTCTTTTTTTTGATATAAAAATCATTATATTATATTTAGT # Right flank : TAGCAGCCCGTGATCTCCGCAGTGAGTCAGTGCTAAACGAAACTCATACAGATGATACGATATACTCGGCTCGCATCGGCATATTTATATTTCTGTTCACGCTAGGTATGTACTCACAATTAGTGATGCAGCCTAGGGTGAGTATTGCCAAAATTCCACTCAACCTCTCTCTTATCCGCATTATTCTATAGCTGTGAGTTTATTCGCAGTATTACTTTAACAGCTGTTGCACGCTATTTGTCTATCTTCACTTAAGGTTGTTTACTATGAGCTATTACGATTACTGGGGGAAAACGGATAAATCAGATCCATCTCACTATCATTTATTACCCTATCACAGCTTAGATGTTGCAGCAGTTGGACAACAACTACTTTCAACTGATGCGATTTTAACTCGTGAGTTGTCTCAACTACTTGATATTGATGAAAAACAGCTATCTAACTTGGTGGTTTTTTTTATTGCTTTGCATGATTTAGGGAAATTTGCCTCAGCATTTCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACCCATAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //