Array 1 1032229-1034574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011536.1 Limosilactobacillus fermentum 3872 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1032229 36 100.0 30 .................................... GCTACTTTAGATTTAACAGTTGTACAGCTT 1032295 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 1032361 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 1032427 36 100.0 30 .................................... ATCTTTAAATAACGGTCATCGCCCATATCA 1032493 36 100.0 30 .................................... CAGTTTTACAATGACTACGGGATCCATTGG 1032559 36 100.0 30 .................................... TCCCAGATTGATGAACCGAAAATCTTGTTA 1032625 36 100.0 30 .................................... GCCCGGCCACTGTTTCATCTTACATAGCCA 1032691 36 100.0 30 .................................... TCCGGCGCGTCAAAAACCGCTAAGCCCCCC 1032757 36 100.0 30 .................................... TTGCATAGAAAGGAAGCATATTAAATGGCA 1032823 36 100.0 30 .................................... GGGACACTAGTCATTTGCACGTGGGAGTTA 1032889 36 100.0 30 .................................... CGCCGCTACCATGATGGGGATCAATATATC 1032955 36 100.0 30 .................................... ACTTTTCTATTGATGAAGAAAAGTACTTAG 1033021 36 100.0 30 .................................... CATTCTGGGCTAAGTTAGAAGCAAAGGTCC 1033087 36 100.0 30 .................................... ATAACGATTTAATTGTTAACGGCAAGCATT 1033153 36 100.0 30 .................................... GACGTAGACCTTCACTTAGACAATCTTTTT 1033219 36 100.0 30 .................................... AAGCAGCCTATCAGAGTGGGGCGGAAAACC 1033285 36 100.0 30 .................................... TCTCATGTACGAGACTAGATCAGGTCCGTC 1033351 36 100.0 30 .................................... TACTTACAGTGCCTACGACCGGCGACTGGG 1033417 36 100.0 30 .................................... CAGTACTTGCGACCGGCGACCCTCTTTGGC 1033483 36 100.0 30 .................................... CATTCGTAAGATTATGATGCGTCAACGGCA 1033549 36 100.0 30 .................................... GTGGTTTCATTACCAGAGAACGTCGTCCCG 1033615 36 100.0 30 .................................... TAAAGAAATCGAAAAGTTAGACTACGAGCA 1033681 36 100.0 30 .................................... ATCGTTGACCATAAGGCGTTAATTGCTCCC 1033747 36 100.0 30 .................................... AACAGCACGAACAGAAGTTCATCAATACCC 1033813 36 100.0 30 .................................... TAAAGAGTTTGAAAAGGCAACTAACAAGTG 1033879 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 1033945 36 100.0 30 .................................... TGCGAGGATAATGAATATCGTAATGTCCCA 1034011 36 100.0 30 .................................... CAAGTAACTAGCAACTTATAAGTAGGGGAA 1034077 36 100.0 30 .................................... TGTTACCGCTTGCGCTTCCTAGCCCGACAA 1034143 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 1034209 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 1034275 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 1034341 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 1034407 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 1034473 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 1034539 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.5 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1503105-1501963 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011536.1 Limosilactobacillus fermentum 3872 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1503104 35 100.0 35 ................................... CCACAAAGGTAAGAACACTGCACCGGCTATATGGC 1503034 35 100.0 35 ................................... AGCTCAGCTAACCATTGATCGGCTTGTTCTTCATC 1502964 35 100.0 35 ................................... GCACCTCGTGATCTCGAGGGGTTGTCCAGCTACGC 1502894 35 100.0 34 ................................... GGTAAGCCACATACTACACAAACACGGACTATTA 1502825 35 100.0 33 ................................... GCCAAACGGTCGATCGTCGAAAAGTTTTGGCTA 1502757 35 100.0 34 ................................... AACGTTGCCTTGCTCGGATCACCGGGAACAGGCA 1502688 35 100.0 34 ................................... TCTCGGTTATGACATCATCGATGAAGAAGGATTG 1502619 35 100.0 35 ................................... TCCTCAAGAACGTCAGGATGATTGCAATTCTTGTT 1502549 35 100.0 33 ................................... AAGCAGATGTTGGTTGGTATAGTATCAATGGGA 1502481 35 100.0 34 ................................... AGATAAAAGGAGAAATAAAAATGAAAACAACATA 1502412 35 100.0 36 ................................... AGGCAATGCTAAGACCATTAAACGCATGGTTGGCGC 1502341 35 100.0 34 ................................... ATCCAACAACGGTTTGGAAGCTGACAAGGCTGGT 1502272 35 100.0 34 ................................... CTTTTGCGATTGGGACAGTGACGACTGGAGACAC 1502203 35 100.0 33 ................................... AATGAGGCGGACAAGCTTTCGAAGCTATACCAC 1502135 35 100.0 34 ................................... ACCTTTGCGGATTGCCAATTCATCCTTGAGCAAG 1502066 35 100.0 34 ................................... AGCCTTCAACCGCTCGAATTCCGCTAAACGTTCC 1501997 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 17 35 100.0 34 GTCGCACTCCTTCGTGGGGGTGCGTGGATTGAAAT # Left flank : GGACTTATCTGAAACCTTGGAGGTATCGAATGTCATCCCACTTATTGAAAAGGCTAAGCACAGTCGCCATATTAGCAAGCCATTAATCATGCACAGTGATCGTGGTAGTCAGTTTATGTCTGAAGCTTACAATCAAGTTACAGCTAACATGACATTAAGCTATTCAAAGAAAGCTTATCCTTGGGATAATGCCTGCATTGAGTCGTTTCATGCCTTGATTAAGCGTGAATGGATAAATCGGTTTAAAATCCATTCATACTCCGAAGCTAAACGACTAGTTTTTCAGTACATTGAAACGTTTTACAACACAGTTAGAATTCACAGTCACTGTGGATTCAAATCACCAAAGCAACTTGAAGATGAGTATCAAACTCAAATTCAAAATTTAGTCGTGGCATAGGACAAAAAAGTCTCTATTTAAATTGTCTATTTTATTGACAGGGAACCAGGGTGCGTGGATTGAAATACGAGAAGTGGGTGGACATCAAGCCATTAGCCGA # Right flank : GCACGTTCAACATGCTAAAGGCTTCTGACCCATCGTCGCACTCCTTCGTGGGGGTGTGGTCCCCTGTCAATAAAATAGACAATTTAAATAGAGACTTTTTTGTCCTATGCCACGACTAAATTTTGAATTTGAGTTTGATACTCATCTTCAAGTTGCTTTGGTGATTTGAATCCACAGTGACTGTGAATTCTAACTGTGTTGTAAAACGTTTCAATGTACTGAAAAACTAGTCGTTTAGCTTCGGAGTATGAATGGATTTTAAACCGATTTATCCATTCACGCTTAATCAAGGCATGAAACGACTCAATGCAGGCATTATCCCAAGGATAAGCTTTCTTTGAATAGCTTAATGTCATATTAGCTGTAACTTGATTGTAAGCTTCAGACGTAAACTGACTACCACGATCACTGTGCATGATTAATGGCTTGCTAATATGGCGACTGTGCTTAGTCTTTTCAATAAGTGGGATGATATTTGATACCTCCAAGGTTTCAGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGTGGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 3 1505397-1504459 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011536.1 Limosilactobacillus fermentum 3872 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 1505396 35 100.0 34 ................................... AGAAGAAGGGAAGTAATACTATGGTTAGTCCAGA 1505327 35 100.0 34 ................................... TCAGCATCGGCGACGCTGGTGTAGCGAGCGAAGT 1505258 35 100.0 35 ................................... GAGGAAGCGGCCAATTTTAAAGGCCCGGACGTATT 1505188 35 100.0 35 ................................... AGATTGTTCAGCGCTGGCGTGGGAAGCCTTCGCAT 1505118 35 100.0 35 ................................... GATGAACCAGTCACGCTCAAAACTTGAGATGTTGT 1505048 35 100.0 35 ................................... AAGAGATGCTAACCATGTATCCAGGCTGGATGGAT 1504978 35 100.0 33 ................................... AACAGCACGACCAGCAATCATACTCAAAGTAAA 1504910 35 100.0 33 ................................... GTGTTAAGCCAGCCACGGAACCAACAAGGCGGC 1504842 35 100.0 36 ................................... AGCTCCTACATCATCATCACCATCTGGATTGCCTGT 1504771 35 100.0 34 ................................... CCTAACTTGGTCTTAGCTAGTGCTTGGCTAGATA 1504702 35 100.0 33 ................................... AGGTCATCACTCAACAGATAGAGATCCACCAGC 1504634 35 100.0 34 ................................... ATATATATTCGTGGTACTATATAGTTGTAGCAAG 1504565 35 100.0 35 ................................... GAGTAGGGCTCAACGTCTTCGTGTTCCCGCAGTTT 1504495 35 85.7 0 ......................G..A..A.A...A | CC [1504469] ========== ====== ====== ====== =================================== ==================================== ================== 14 35 99.0 34 GTCGCACTCCTTCGTGGGGGTGCGTGGATTGAAAT # Left flank : CGAGGCGATTTGGATGAATATCCACCTTTTCTCTGGAAGTAGGTGCTTTAAATGTTGGTAATTGTTAGTTATGATGTAAATACAGAAGACCCAGCTGGGAGAAGACGATTGCGTCACGTGGCAAAGATTTGTAAGGATTACGGTCAACGGATTCAAAAGTCAGTATTTGAATGTAATGTTGATTCCACTAAGCTTACTGTCTTAAAGCAACGTCTTCTAGCGGAATATGATGAAGATACAGATAGCCTATGTTTCTTTAATCTAGGTAACAAATATCAGAATAAGGTAAGCCACTATGGTTCTAATTCGGTGGTAAACTTAGATGAACCGGTAATATTCTAGTATTATCAGTAGTGCGAACCTAAAGTGAACATAAATTCTTTAAGGATTCGCACCAGAATTTTGGTGATTTTATTCAAAAATCACACTAACAGTTGGTTTTTCAGCTGTTTGACACCCAATATGTAGAAGATGGAGTTCTCTATTTGCTATATATTGCA # Right flank : GTGTACAAGTTAAATAGAGACTCTGATTTAGTATAATTAAGGAAGTAAATTGGAGGATCAAATAATGACGAAGCACAGTTATGACAAGGAATTTAAGGAACAGGCCGTTCAGTATTACTTAGATAACAAGGATCACATGACCATGAATGAAATAAGTAAGAATCTAGGTATTGGGGCTAGTACATTACATAAATGGATTAAGCTGTTTACTGAGACTGGGGAGTTTGGCAGTGGCTCTGGTAATTTTGCCAGCGATAAGGACAAGGAGATTGCACGACTAAAGCGTCAACTTCGTGACGCTGAAGGAGCGATCGAAGTATTAAAAAAATCAATCGGGATTCTGAGCAAGTAACTACCGAAAAGGTATACCAAGAAATGGACGTTCAGCACGCTTTGGAATCCCACCCTTCCATCAATGGTATGTGTGATTATGTTGGAATCTCAAGAAGTGGTTACTATCAACGAGAAAAGCGTCATAATCACCAATCACCGCGAAAGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGTGGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //