Array 1 2939273-2938747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021377.1 Oceanisphaera profunda strain SM1222 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2939272 36 100.0 34 .................................... TCATTTCGATAATCGGCACTTCTATTACTTTCAT 2939202 36 100.0 34 .................................... AAAAAGAGACAAGCCAACAACTGCAACTACAGCT 2939132 36 100.0 33 .................................... ACTACCAGTTGGTCCAATTAACAGTGCGTTACT 2939063 36 100.0 35 .................................... TCTACCCCTAGAACTTCTTGTGCGGAGATGATGGC 2938992 36 100.0 35 .................................... AGAAAGTGAAGCACCTAAAGGATCTGCATTTTTCA 2938921 36 100.0 33 .................................... GTGTCTTCAGCTTCATCGTACTGATAATACTTA 2938852 36 91.7 33 ........G.C.......C................. TGTGGCTTATCGTTCTTCTTGGCATGGTGCATT 2938783 36 83.3 0 ........................G..T....GCGT | T [2938751] ========== ====== ====== ====== ==================================== =================================== ================== 8 36 96.9 34 CTCTGAACCCAGCCCTGATTTAAAAGGGATTAAGAC # Left flank : CTTTAGAAGAAAAATTTAAGCCGCCACTCACTTGAGCATAACTGGCAACCAGCAAATCCCATACTTGAGCAACAAATGACTGCATCATGTCGATATCGTTACAAGCAGTAATAGAAGAATGAGGAATGGGATTTCGCATGTTTACTCCAGTCAGGCCAAGGGGGTCGGTTGATAGGAGAAGCTTACTCAGTCACACTTTTCTTATTAGCCATGCAAGCTTGTGACTCACTAACAGATCTACGCCCGCACCCTTTACTTACCGCGCCCAACAGCAGATAATGCAGGCGGTTTTGTTCTTTAAAAGACTGGTTTGGTTAGTTAATATTTGTTGGCAAGTAAGGCCAAGCACAGTGCTTTGCTTACTTTCAAACAGTTAGGTTATTTATTGAGCAATTCAGCAGTAAAAAGAGGACTCAATCGAACAGCGATTTTTAGATTTAACAATCGTCAATAAAGGCCTCTGTAAGTGTTTGATTGTAAAGCGGTTAAAACGCTCTACC # Right flank : TGAATTTTGAATAGAAAGGCAGCACTGTGCAGCACGCTCTTGCGTGGAGGTGCACTGGTCGGTCAACTCTCTACTGTGAGTTTAAGCTTGGTTTACAGCGTGTCGCTTCGCGCCACCCGCCGAATAAATTGGCGGCTACAAGTCGCGGAAATAAAAACGCCTGCACTATTGCTAGTGCAGGCGTTTTTTATGTGCATTTTTCAAATGGCTAGGATTATTGTCGGTATCCAACGCCATCGCTACTTCCTTATTCCATAACAAACTCGGTGGCTAGTAAGGCCAGGCTGCAGTCGTCGCCAGACATGCCGGTGACAAACTCTTCAGCCACTAAGCGCTGCACTAAAGTATGCCGCTTGAGTTTGCCGGCGCGCAGGCTGTGAAACCACTGGCTCAATTGCGATGACGCTCTACTGCCGTCATAGGCCACCAGTCGCTCTGCGGCACCATCACTCATCAGTGCCAAACCGGTCAACCCTGCTATCGGCATAAAACCGCTTTGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAACCCAGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2957014-2958174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021377.1 Oceanisphaera profunda strain SM1222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2957014 36 100.0 36 .................................... CAATGAGTGCGGGCAATAAACAGCCTTTCCCACGTC 2957086 36 100.0 34 .................................... TCTGACAATCTTGGGCACCGAATTCCTTGCTGAT 2957156 36 100.0 34 .................................... CCTCGGCTTCTTTGCGCGTTTGAGCATGCAAGTG 2957226 36 100.0 34 .................................... TACAAGGCCCGTCATCGGGGCCACAGGAGGTGTT 2957296 36 100.0 34 .................................... AGCGGAATCTAAGCTAGCTGAGTTCTGCCACATT 2957366 36 100.0 36 .................................... TCAATGGTCATGACGTTGCCGTGCTTCTCCCACAAC 2957438 36 100.0 35 .................................... CTGTTCAGGAATCACCCCCATGTTAGCTGTCATTC 2957509 36 100.0 34 .................................... GTTGGGGTAGCGCTTTAATTGCTCGTCCAATTCT 2957579 36 100.0 32 .................................... ACTTAAATCTGGCGGCATAGATAAACTTAAAT 2957647 36 100.0 33 .................................... GGTAAACCGGCCAAGACCAGCGCCACCGAGCAA 2957716 36 97.2 36 ........T........................... TAAGTCCGGTATGTTGCATGTCGAACAGTCGGTCGA 2957788 36 100.0 33 .................................... TGTCTGAGGCTGGCACCCACAGCAGGGTATCTT 2957857 36 97.2 35 ........T........................... AACATCACATGGCCGATGTACTTGAAGTGGTCATG 2957928 36 100.0 35 .................................... AACATCACATGGCCGATGTACTTGAAGTGGTCATG 2957999 36 100.0 34 .................................... ATACTTGTAGATGTCGTTATATCCGACTGAATTG 2958069 36 97.2 34 .....................G.............. TTCTTGGGACTGAAGCCAGAGGTATATGTCTCCA 2958139 36 97.2 0 ........T........................... | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 99.3 34 CTCTGAACCCAGCCCTGATTTAAAAGGGATTAAGAC # Left flank : TTTAATTTGTTACGATATTCGCCAACCTCGTCGCTTGCAGCGTATTCATAAGTGGTTAACAAAACACGCGACGGCGCTGCAGTATTCGGTGTTTTTAGCTAACTTGAATAAGGCTGAGCTAAACCAAGTGCGCCAAGGGTTACAAAAATTGATGGAAGAGAGTGAAGACGATGTACGTATCTTTGCGGTGCAAGCCCCCGAACACGCCTTTATCATCGGCAAGCCGCTTCGCTTTTGTGCGGCTGGGCTAGTATTTGTGCATTAGTTAAAAAAATCAACCACATAGGCTTTACTTGGCAATGCTTATCTTAGACAATACGCGCTAAGCATTGCTCTTTAATAACTCGCTGTGTTTTTTATCGTGATGCTGTAACAAGTTAACGAGGCAGTCATTGATGAGCAATAATAGGGACTCGATCGAACAGCGCTTTTTAGATTTAACAATCTTCAATAAAGGCCTCTGTAAGTGTTTGATTGTAAAGCGGTTAAAACGCTCTGCC # Right flank : CCCTTCATCACCAGCTCGAGTGTCTGTGTAGTGTTATTATTCAGCCTGCGGTGAAATGCGAGCACAAGTGTTCGCCTACCAGTACCAAAGCTAAGAACGAGATCCTGACGTGCGTCAGGAAGACGGCATAAGGGAAAAGCCTTAAATGCACTGGCCGGTCCACCCTCTACAGTGAGTTTAAGCTTGGTTTACAGCGTGTCGCTTCGCGCCACCCGCCGAATAAATTGGCGGCTACATTGTTTAGCTCGGTGCTACTTTTATTGTTCCGCCTTCGGCGAAATGCGAGAGCAAGCGTTCGCCTACCAGTGCCAAATCCTAGAGCGAGATCCTGACGTGCGTCAGGAAGACGGCATAAGGGATAATCCTAAAACAAACCTGCATATATTTTTAGCCCGTTTATTCAGACTATTTATTTAGCTCGGCGCTGCCTTGTAACTGTATTTTATAAGGGATATTTTTAATGAGCGCAGGCTCGCTTTAGTTGTGATCTTTAAGCGAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAACCCAGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 2960608-2961342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021377.1 Oceanisphaera profunda strain SM1222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2960608 36 100.0 35 .................................... GGAACGTTGGAAGAGGAAGAGGTGCGGTGGTTGGA 2960679 36 100.0 35 .................................... ACCAAAAGCGTCACACCACTGGTTATCAGTGTGTG 2960750 36 100.0 32 .................................... ACAGATACTACTTTAGACAGTTTACGAATCAA 2960818 36 100.0 33 .................................... ATTGCTGCGCAACTCGTCCATTTCTGCTTTGGC 2960887 36 100.0 34 .................................... TGGCGTCTAACGTGTCCACCACTTTAAGTATAGC 2960957 36 100.0 35 .................................... ACAACCCTTGCGGCCTTACCAGTGTCGATTATTAC 2961028 36 100.0 34 .................................... CCGCTGTTTTTGCCTAATAAAGACAATCAATTAA 2961098 36 100.0 34 .................................... ACAGACTGAGGGTGGTTAGTAGGTCCGTTAGGCG 2961168 36 100.0 33 .................................... ACAGTAACTTCAACAAACTCAGCACCAATGACC 2961237 36 100.0 33 .................................... CTATGAATAGTGCGGTGCTTGCAATCAGGCTAC 2961306 36 75.0 0 ..................C..A......CAC.TCGA | A [2961332] ========== ====== ====== ====== ==================================== =================================== ================== 11 36 97.7 34 CTCTGAATTCAGCCCCGATTTGAAGGGGATTAAGAC # Left flank : GGGTGATCATTGGCAAGCCTATGATATTTAGCGCCCAAGGCTTAATTTTTGTGCATTAGTAGCGAATAATCAGCAGCGTAAGTTTTGCTTTTTCGAACAGCGGTCGGCGTAAAGTGTTTAGCTGCTTTCTGCCGTTATACTGGGCTAGCCTCGGTATCTCGTTTTAGTTTTATCGCTATGCCGCCATATCGGACTCGCTCCGGTATCTCGCTTTTATGGTTCATCTTTAAGCAGTCTTTGCGAGGAGTGCAACGACGCGGCAATCCACTCTTTACCTAGCCCCAAGAGCCCCACTTTACTTGGTGGGGCTTATCTTAGATAATGCAGGGGTTCTTTAATATATTGCCCAGTGTTGCATAATGCGTTTAGCAATAAAGCGGATAAGGTAGTGTTTAATGAGCAAAAAACGGGACTCGATCGAACAGCGCTTTTTAGATTTAACAATCGCCAATAAAGGCCTTTGTAACGTCTTGATTATAAAGCAGAAATATCGTCGGTCC # Right flank : AGGTGCCTGTCATACCAACGCTTCGTCCTCTGAACCCAGCTTTTATTGTTCCGCCTGCGGCGAAATGCGAGAACAAGTGTTCGCCTACCAGTACCAAATCTAAGAGCGAGATCCTGACGTGCGTCAGGAAGACGGCATAAGTGACAATCCTTCTTCGCACCCAGCTTTTATTGTTCCGCCTGCGGCGAAATGCGAGAACAAGTGTTCGCCTACCAGTACCAAATCTAAGAGCGAGATCCTGACGTGCGTCAGGAAGACGGCATAAGTGACAATCCTTCTTCGAACCCTGCTTTTATTGTTCCGCCTGCGGCGAAATGCGAGAGCAAGTGTTCGCCTACCAGTACCAAATCTAAGAGCGAGATCCTGACGTGCGTCAGGAAGACGGCATAAGTGACAATCCTTCTTCGAACCCTGCTTTTATTGTTCCGCCTGCGGCGAAATGCGAGAGCAAGCGTTCGCCTACCAGTGCCAAAGCTAAGAACGAGATCCTGACGTGCGTC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAATTCAGCCCCGATTTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 2971765-2972502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021377.1 Oceanisphaera profunda strain SM1222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 2971765 36 100.0 33 .................................... ATGTGATGATCACCACCCTCACGCCGGAGCAGC 2971834 36 100.0 34 .................................... ATTAGCTAACTCGATCACTTTATCTGCCATTGAA 2971904 36 100.0 35 .................................... CTAAGTCACCACTCGCTAAGAACGTCTCCCACCAA 2971975 36 100.0 35 .................................... GCATTCATGTCTCCGTAAGAGTACACGGTGAATAG 2972046 36 100.0 35 .................................... GCATTCATGTCTCCGTAAGAGTACACGGTGAATAG 2972117 36 100.0 34 .................................... TTTAAATTAATAGCTTATTGCAGCACCTATAATT 2972187 36 100.0 33 .................................... CAGAAAAAGGTCACTGCTGGGTTAACGTCTGTT 2972256 36 100.0 35 .................................... TTCCCCATAGTTGCCAAAGATTTCATGATAGCCTC 2972327 36 100.0 34 .................................... CCTCTGCTGCCTTGGTCATAGCCGCCTTGGCCTT 2972397 36 100.0 34 .................................... ACCTGCCAGTAATGTTTATGGTGTGACTTTAATG 2972467 36 91.7 0 ...............T..C..A.............. | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 99.2 34 CTCTGAATTCAGCCCCGATTTGAAGGGGATTAAGAC # Left flank : GGTGAAAAAAATCAGAAAGCTACTCACCCCAGAGTAAGCACAGTTAGATTAAAGCCCATCATTATAGTAGGTAATCGTTAAGCCGTTATACCGGGCTAGCCTCGGTATCTCGTTTTAGTTTTATCGCTATGCCGTCATACCGGACTCGCTCCGGTATCTCGCTTTAGTTTTATCGCTATGCCGCCATACCGGACTCGCTCCGGTATCTCGCTTTTATGGTTCATCTTTAAGCAGTCTTTGCGAGGAGTGCAACGACGCGGCAATCCACTCTTTACCTGGCCCCAAGAGCCCCACTTTACTTGGTGGGGCTTATCTTAGATAATGCAGGGGTTCTTTAATATATTGGCCAGTGTTGCATAATGCGTTTAGCAATAAAGCGGATAAGGTAGTGTTTAATGAGCAAAAAACAGGACTCGATCGAACAGCGCTTTTTAGATTTAACAAACGCCAATAAAGGCCTTTGTAACGTCTTGATTATAAAGCAGAAATATCGTCGGTCC # Right flank : CCCTAAGCAGCGCCGAGCACTAAGCGCCCGGCGCCAAGCTTAAAGAAGATATCGCTGTTTGTAGTGTGCCACTTTAGCTGGCACTCCCGCTTGGCGGGAATATTTAACCCTATTCTGCCTCGCAAGACCCGCAGCTGAAGCGCGGGGCTACAGGGGATTAAGACCGCTCGATAATCTTCAAATCCTCCGGGCTAGTACAGCTCTGAATTTAACCCCTTTACCTGTCGTAGCTAAAGCGGCGGCTACAAAATAACCACTAAGTTTTAAGTTTTTTCAATGCTTAAGTTTTTTATTTTCATAATAAAGAGTCGTTGCAAGTACGATTTGAGCTTAACTTTATATCTCCTCCTCATTATTTACGCCTGCCTGAAAACTCTATCCCCAGGGAGCAACAGTAGATTTTTTCATCTGCTCAATGTCTTTAAGCATGTTATTTACTTTAGGTGTCAGCACTTAAATAGTGCCCCATAATTATGCGAGTCAATTTTTATGACCGCTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAATTCAGCCCCGATTTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 5 3251496-3253207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021377.1 Oceanisphaera profunda strain SM1222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 3251496 28 100.0 32 ............................ TAACAGTTAGCAATTTAAACTGCTGATAAGTG 3251556 28 100.0 32 ............................ AAACCGCGAGCTTACAAACCGTGCCTGGTCAA 3251616 28 100.0 32 ............................ ACCTTGCATTCGTGACGGTCACAACTATAATT 3251676 28 100.0 32 ............................ TAACGCGCATCTTATGGAACCGCCTTGGCATG 3251736 28 100.0 32 ............................ CGTAATAAAAGTAGTTAATAACACAATCCCCC 3251796 28 100.0 32 ............................ GCTTCACTGCGCCCCTTTCCGCTATTGGTTGC 3251856 28 100.0 32 ............................ GCTACACGCCCAGCGCCAGCGAGTAACCATGC 3251916 28 100.0 32 ............................ ACTAAGGCGTTTCACTTAGCCAAGGCATACAT 3251976 28 100.0 32 ............................ TTAACCTGCGTTAGGGCGCGGGCTTCAAATGC 3252036 28 100.0 32 ............................ AAGCACGGAGTTTTTTAACATAATCAGAGATG 3252096 28 100.0 32 ............................ TGTACCCTCTACACCCGTGCGTCGGCGGCGGA 3252156 28 100.0 32 ............................ TCCGACACACTCGATGCCGTGGAGTGCTACGG 3252216 28 100.0 32 ............................ ACAAGGAGCGGTAGGCCGAACCTTACCCTTAG 3252276 28 100.0 32 ............................ TGAATTTGTAGGGTTGTTTCGGGGTTAAGGTT 3252336 28 100.0 32 ............................ AAGTTCACAGCTAAGGGTATTAACTGGCTAGC 3252396 28 100.0 32 ............................ ACATGGCCAAGCACACCGGCTTTGCAGAACGC 3252456 28 100.0 32 ............................ TCAATGAGCTGGGCGATCACCGCTTCGTTGTC 3252516 28 100.0 32 ............................ GTGCTGTGATCAACAAGGTCGATCCATGTTTG 3252576 28 100.0 32 ............................ TTGCCCCACGTTGGCCCAGCCCGATCGGATCT 3252636 28 100.0 32 ............................ GTCCGCCGTTTCCGTGCCGTTTATGAATGCCG 3252696 28 100.0 32 ............................ TGCTGTTCGCCGTGGCTCCGGTCGTCTTGCTC 3252756 28 100.0 32 ............................ CTCCACCTATTGCCATGCACATTTCTTTTTTA 3252816 28 100.0 32 ............................ CGTGCACAATACGATCCGGTACTCCTCGGCGT 3252876 28 100.0 32 ............................ AAACCAAGGAGGGTCAAATGTTTAAATATAAC 3252936 28 100.0 32 ............................ GCGAGTGTAAAGCGGATGCTGGTGGTGATGAT 3252996 28 100.0 38 ............................ AATGGAAGGGAGCCGAAAGAGCCATCAGGGATAGGGAT 3253062 28 89.3 32 ......T...........A...C..... ATGGACACCGGCCAGCATTACCCAGCGTAACG 3253122 28 82.1 30 G.....T...........C...C.A... GTTACTACCAGTTTTGAGCGGTTTTGTAAA 3253180 28 78.6 0 ...T..T....A......A.T...T... | ========== ====== ====== ====== ============================ ====================================== ================== 29 28 98.3 32 CTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : ACCCATTTGAAATCGATTCAGCTGGTGCCTGAATCGGTCTCTCATGTTGCGTTTGTTCGCCATCGGGTAAAAGGCCAGGCTCGCATCGAAAAAGACATGCTCAGTAAAGCTCAGATCTGGTCTACAAAGTCAGGCCAAAGCCTTGAGCTGTGCTTGCAGCAACTGGAGAAAAGCAAACCCGCAGCGGACTCGAAATTGCCTTTTATCTGGATGGAAAGCTTGGAGACCAAAGCGAAAAACCTCACCGGTTCGGCTAAGTTTCCATTGTTTATTGAACGGGTAGAAGTAGCAGGTGTAAGAGAAGGGCAGTTAAATTGCTATGGCTTAAGTGCAGTACGAGGCGAGCAAATAGCTTCAGTACCGCATTTTTAACCTCAAAATAAGCTCTTTAAAAATATACAATTAAAACAGATAGTTACAACAGCGCTGAAAATAAGGGTATTTTTTCATATTCTTAGCTAAGCCTTTGTTGTAACTATTTTTTGTGTTAAGTTTCTACT # Right flank : ATAGCATCAGGGCAGGGTGTTAAGCCGGTTGGTTTTTGAGGCTGGTGGGTCGAACAGCCTGTAGGGGCTCTGTGAAACAGGACAGGCCTTAAGAGCTCTTCTCTGAATTCATGGGTTACACCAAAACCGTGCCGATACTCTTTACCTACCAACAAGGTGGGCACACTACAAAAACACCGAATCAACAGGTACGGTGTTACACGTATGCACTCCCCATCACCCACCGCATGTAGTCATTCCGAACTCCAAGCTCAAGACACACACTACGCCGTGCCAAACGGTTACGCCGGTGGCGTAATGTGAGCACAGGTATACGCCTGCTAAACACTGGCTGGTATTTGCCTCTTTTCATCCGCTAATTCATGTCAACCGGCTCACGAACTAATAGTCAGCGTACATACTGAAGGGCAGGTGGTGTTAAAAATAAATGTCACCGATTTTAATCTGCTGCGTCTAATAGGGTAGGCATCCAAAAACAGTGATGGAGAATCTCGGTATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //