Array 1 21628-20801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHE010000010.1 Streptococcus suis strain SCMY SCMY_scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21627 36 100.0 30 .................................... AATTTTTGGCTGATGATGTTGCTTGAGAAA 21561 36 100.0 30 .................................... TAGAAATGGAAAATTCGCAAAAGAAATATA 21495 36 100.0 30 .................................... AAAAGCTTATTCAGCATATCGTGTCAAAGG 21429 36 100.0 30 .................................... CTATGGTTTTCTTTTCGTCTATCATCGTAT 21363 36 100.0 29 .................................... ATATTCAATTTACTAAATTCAAAAATCCA 21298 36 100.0 30 .................................... AATTATTGTGTATCATTCAAATCAAGCACA 21232 36 100.0 30 .................................... GAATTGCTAAAGAACAGCTAGACGTGCTAT 21166 36 100.0 30 .................................... TACTTTTTGGGGACATCAGCAAAACACATA 21100 36 100.0 30 .................................... TCTTTTAATTGTTTCAAACAGTCACCCCCT 21034 36 100.0 30 .................................... CGAAAACGTCGTTCCACATCCAGCTGTCTA 20968 36 100.0 30 .................................... AATAAAGCGAAACAAAAAACGAAGATAAAA 20902 36 100.0 30 .................................... CTTCTGGTAGTTATCCCCATAACATTTGTA 20836 35 83.3 0 .......................T..T.-....TCA | T [20812] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //