Array 1 28602-24911 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJK01000008.1 Vibrio cholerae strain MGL390 scaffold_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28601 28 100.0 32 ............................ TCATCAAGAATCAGACGCTTAACATCAAACAA 28541 28 100.0 32 ............................ AAACTTAGACCCTGCGTCACCATATTATGTCA 28481 28 100.0 32 ............................ AGACATTCCGGCTGAGGGCTCAAATAATGAAG 28421 28 100.0 32 ............................ AGTAAATGCGAGAAGTACGAGAGCCAACAGAA 28361 28 100.0 32 ............................ AGAAGAATTGACAGCCGCAACCAATCTGTCTG 28301 28 100.0 32 ............................ ATTGTTCAGTTTCATGAAGAGATACGCTTTTT 28241 28 100.0 32 ............................ GCTTTGTCTGTTGGCTTTTTGGTTTAACACTG 28181 28 100.0 32 ............................ TTTGCCCGCACGAATTGAACCATAAACCCAGA 28121 28 100.0 32 ............................ CGGTCAAACTTTGCGTAAATACGAGATCATTC 28061 28 100.0 32 ............................ ACGCCATTAAACAACCCTCAAATTATCATTGA 28001 28 100.0 32 ............................ GTTAATCTGGAAGTGCACGGTGTCATTGTTGC 27941 28 100.0 32 ............................ AGTAATGCCCGTAATTATGGGAAGTAAGAAAA 27881 28 100.0 32 ............................ GTTTTAACAATGGTTATCGGTTTAGCTTTGGC 27821 28 100.0 32 ............................ AAGTCTGGATTTGATGTTTTGAATCTTGTTGG 27761 28 100.0 32 ............................ ATCTTTCGATACGCATACATCAATTGGCATGC 27701 28 100.0 32 ............................ ATGTACGCTTGACGATAAGCGCGATTGATTTC 27641 28 100.0 32 ............................ GCGTCGTAGTTCACCAGGCGTGCGCGGTCCGA 27581 28 100.0 32 ............................ ACTCATCAGCTATAAGTCAAGTAATTTATTGG 27521 28 100.0 32 ............................ ATGCACTAGGCGCAATCGGTCTTGATATGCTG 27461 28 100.0 32 ............................ TGCCGCTATGGATTGCACGTCCATCATGCACA 27401 28 100.0 32 ............................ TTAACAAACTAATGCTCCTAATCGGCGCAATC 27341 28 100.0 32 ............................ AAATGCTGGGTGTGAGGTTTTAGAGAAGAACC 27281 28 100.0 32 ............................ TAGCACGCTAAGTGTCACTGGCGATGCTCCGG 27221 28 100.0 32 ............................ GCAATGAAGAGCAGTCACAACCACAACCACAA 27161 28 100.0 32 ............................ GGATTGAGTGGTGCGTACGTGGCTGATGGCAC 27101 28 100.0 32 ............................ ATATGCATAAACACGACTCGCATGAACTTGCT 27041 28 100.0 32 ............................ TTATAGTTGCTCTTTCTAGATTTGTAGAATTC 26981 28 100.0 32 ............................ ACTCCTCCTATGCGTAACAGCTTGAACCTTAA 26921 28 100.0 32 ............................ TGCTGGATCGCCAATTTTGCCACAAGGATTGC 26861 28 100.0 32 ............................ TTGCGGCGTTCTGCGGTTTAGCGTGTACAGAC 26801 28 100.0 32 ............................ AATACAGCGAACACGGCGACGATCGCGGTTAG 26741 28 100.0 32 ............................ TGCATGATTGCATCAGATATCTCGGCGCAACT 26681 28 100.0 32 ............................ ATTGAAGCAAAGCATCAGCAACTTCCTGATTA 26621 28 100.0 32 ............................ TCTCCATCGTGCTTAAATCGGTCATAGCCAAT 26561 28 100.0 32 ............................ ACGTTTATTTTTGGCAACTCAAGGCCCAGTTC 26501 28 100.0 32 ............................ GGTAACTCATGGCCGTGCCGGTGATGATGGAA 26441 28 100.0 32 ............................ AAAGAGACCGTGAAAATCATCGACAGCCAAAT 26381 28 100.0 32 ............................ ACTTCCTGATTCTGGCGGTGGTAACGGTGGTT 26321 28 100.0 32 ............................ TCATAACCATAGAGCCCCTTTTCACGCCAAGG 26261 28 100.0 32 ............................ TGTAAAGGTGGTTACAAAAAAGAAACAAGTAG 26201 28 100.0 32 ............................ TGTCTGAAGTGCGAAAAGCATCGTCTGAATAA 26141 28 100.0 32 ............................ TAGCCGCTTCCGCTCTTTATTGGTGGGCTACT 26081 28 100.0 32 ............................ ACTTCCTGACTCTGGCGGTGGTAATGGTGGTT 26021 28 100.0 32 ............................ AACTTCAAAGGATTCATTAAGAACTTTGCCAG 25961 28 100.0 32 ............................ AATAAATTCGAGATTTACGATTGCCAACTTCA 25901 28 100.0 32 ............................ ATCACCCAAGCCTGAGAACGACCCGACAACTT 25841 28 100.0 32 ............................ GTATCGTGAACACCGGCGAAGGTGACACGACG 25781 28 100.0 33 ............................ TGGAACAGGTCGCCGCGGAGCTCTTTTTCGATT 25720 28 100.0 32 ............................ TGAAGCAAAAGAGGTAATCACCCCTGCTATTG 25660 28 100.0 32 ............................ ATGACAGGATATTGGCAGCAAGCGTAGCCAAA 25600 28 100.0 32 ............................ GTTAGTATCACAAACCGCCGCCATTCTCGAAT 25540 28 100.0 32 ............................ TCCTGCACTTCGCCGTCGATAGGCTGTAGGAA 25480 28 100.0 32 ............................ TGATCAGCTTGCGAGTAGTTTTATCGCGCGTG 25420 28 100.0 32 ............................ AGCTATCCATCGCAGCACTAACCGGGTCTGTC 25360 28 100.0 32 ............................ ATGAACATCAACAAGTGCCGCGACTAGGTCGA 25300 28 100.0 33 ............................ AGTAGATTCGAGAAGTACGAGAGCCAACAGAAG 25239 28 92.9 32 T.N......................... AATTACGGTATTAACGTCACCGTTATGGAATT 25179 28 100.0 32 ............................ TCAACATCAAATTCACTCAGTGCAGGAGTTGC 25119 28 100.0 33 ............................ TCATAGCTTTCACTCCAGTGATTTACGCCATCG 25058 28 92.9 32 TN.......................... ATAAATCAAATGCCTCCTTCATTGCGTCAGCT 24998 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 24938 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //