Array 1 72278-70182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKO010000011.1 Listeria seeligeri strain FSL W9-0519 NODE_11_length_116182_cov_82.000224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72277 29 100.0 36 ............................. ATGCCGAGCGCAACCAATGAAGATGGTGAAGAACCT 72212 29 100.0 36 ............................. AGAAGAAATCCTTATTCCTGTCTTTTAGTTTTCTTC 72147 29 100.0 35 ............................. TGTCTACCAACTCCAAGAAAGTACACCCGTCTTCC 72083 29 100.0 36 ............................. GAAATTAAGACAACAATAGCAGTAGAAGTTATATCT 72018 29 100.0 36 ............................. AAAACAGAGCCTCCGCCGTCCCAGCCGGTAAGAAGA 71953 29 100.0 34 ............................. TTGCTTTCGGCAGGTACAAAAGCACTATCGAACG 71890 29 100.0 35 ............................. ACTAAAATTGGTGCGACAATTAATGAGAAAATCGC 71826 29 100.0 38 ............................. AGAAAAGATATTTTATGTATTGATGTGAAGTCCTTTTT 71759 29 100.0 36 ............................. TGCTCTCTCAAGTCGTCAGCAACCATCACGATGTCA 71694 29 100.0 35 ............................. TAACCACCTTGTTCAGCATAACGCCCCTGATGATA 71630 29 100.0 36 ............................. ATTCCATGGAGGATGCTCCTGATGGTAAATATTCAC 71565 29 100.0 36 ............................. AGTTGTATACTTATCGTAAACGGCTTTTGGTTTTAG 71500 29 100.0 35 ............................. TCATTTGATGTCGCCAAGCTATTACCTTCAATTAC 71436 29 100.0 34 ............................. TTTGTTTGGGGGCGGAGCGGCTCTTATTCGCTTG 71373 29 100.0 34 ............................. ATCATCACCCGTGAATGATATAACCGCTAACTCA 71310 29 100.0 36 ............................. ATCATTGCGCGTCCGAAAGGGCTAGAAGTGTCAAGC 71245 29 100.0 36 ............................. ATATGCACCACTGTCGTATTGACGTGATGTTTTCTT 71180 29 100.0 35 ............................. TTATTCCCGTTATTTGATGCCGCGGCACAATATTC 71116 29 100.0 35 ............................. CAACTAATCGAAGCGGCTATAACGATTGTCATGGC 71052 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 70987 29 100.0 36 ............................. GTTATTGAAAAGAATATGCAAATATATATAAATAAT 70922 29 100.0 35 ............................. TTTTCACTTGCATATTTTGATAAGATGTTTTCTTC 70858 29 96.6 34 .......C..................... ACCATCCCGTCTGCTGTAAAATATATTCAAGCGC 70795 29 96.6 37 .......C..................... CATGGTATATTTATCATATACTGCCTTAGGTTTTAAT 70729 29 96.6 35 .......C..................... CTCCGTATACTTTCAAATAGAATTTACTAAGTTGA 70665 29 96.6 36 .......C..................... AAAAACACGCGCGATCTGACACCGCTTTGCAACTTC 70600 29 96.6 37 .......C..................... AATTTTTCGATGGTGTCTAAGCCGTCGACCACAATAC 70534 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 70470 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 70405 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 70340 29 96.6 36 .......G..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 70275 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 70210 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 97.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 83634-80876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKO010000011.1 Listeria seeligeri strain FSL W9-0519 NODE_11_length_116182_cov_82.000224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 83633 29 100.0 36 ............................. AACGCCATCATTCAAAGTCATATCCACATTTATTTT 83568 29 100.0 34 ............................. CCAATTAGTTTACTCATAGCGCCGAATGCTTGCG 83505 29 100.0 35 ............................. GCAGTTATTACGGTGGCTGGTGCGGCTTTGCTTGG 83441 29 100.0 35 ............................. ACAGCCTTTATCACAAGTTGGATGGAGCTAGCCAC 83377 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 83313 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 83248 29 100.0 36 ............................. TGTAATTACACCTCCCCAGGATTGTAGATACCTACG 83183 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 83120 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 83054 29 100.0 38 ............................. GCACAGATTAGACAGATTACCAATGCCAAAGTACAAGG 82987 29 100.0 35 ............................. TTGTTCATCTACAGCATAAACTAGGCGACAAGAAA 82923 29 100.0 37 ............................. AATCCACCGACTTTTTCACCAGCATTATTTTTGTTCA 82857 29 100.0 36 ............................. CTGGAAGAGGCGTGGCTAAAGATAGCTGAAATGAAG 82792 29 100.0 37 ............................. AGCCCAAATTGGTTATGGAAACGAGGAAGCTAAGTTC 82726 29 100.0 36 ............................. TAATGTGTCAAGAGCTGCTAGAGAGTCCGGATATTC 82661 29 100.0 37 ............................. CAGAGTACTTACTTATTCGCACATGAATTTAGCAATG 82595 29 100.0 38 ............................. TAAGCGAGTGTCCAGCGTGTTCGCTATGTCACTTAACT 82528 29 100.0 36 ............................. CATTGTAAAGCGAAATTAACTTTGTTCGATGGTGAC 82463 29 100.0 35 ............................. CGAAATACTCTTTATTTAGTCTCATTGTCCTAACT 82399 29 100.0 38 ............................. GCGATTGAAATTGTGAAAAATCGTAAATTAACGGTACG 82332 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 82269 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 82206 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 82140 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 82075 29 100.0 37 ............................. ATATGTATTCAACTATTATTCAGCAAAAGACTTGACA 82009 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 81945 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 81874 29 100.0 36 ............................. TCGTCCCAGCAATCATCAACAATTAGCGGATTTTCA 81809 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 81747 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 81682 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 81616 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 81552 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 81487 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 81423 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 81359 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 81294 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 81229 29 100.0 35 ............................. TCTGGTAAATCGTCCATGTCAAAAGGTAGGTCTAA 81165 29 100.0 37 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTACGAAGA 81099 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 81032 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 80968 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 80905 29 86.2 0 ........C....C..A...........G | T [80878] ========== ====== ====== ====== ============================= ========================================== ================== 43 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 90087-89861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKO010000011.1 Listeria seeligeri strain FSL W9-0519 NODE_11_length_116182_cov_82.000224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 90086 29 100.0 34 ............................. ATAGGTTAGGCACTATCTTAAGTACTAAGATTGA 90023 29 100.0 40 ............................. TCATTATCTAAAGTACACAAATAAATATTACCATCACTAG 89954 29 100.0 36 ............................. TTTTAACGGTGGTAGTTGTTAAGATATTACCATCTT 89889 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 100.0 37 GTTTTAATTACTCATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGAGACCAGAAGTGTTTTAACTACTTTTAATCATCCCAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCGAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTCATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //