Array 1 189234-190421 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPU01000005.1 Escherichia coli strain MOD1-EC5026 MOD1-EC5026_5_length_281000_cov_77.9885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189234 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 189295 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 189356 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 189417 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 189478 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 189539 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 189600 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 189661 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 189722 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 189783 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 189844 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 189905 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 189966 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 190027 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 190088 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 190149 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 190210 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 190271 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 190332 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 190393 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216120-217491 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPU01000005.1 Escherichia coli strain MOD1-EC5026 MOD1-EC5026_5_length_281000_cov_77.9885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216120 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 216181 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 216242 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 216303 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 216364 29 100.0 32 ............................. ACACAGGCGCGAAAACAATCGAACGCGCTAAA 216425 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 216486 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 216547 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 216608 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 216669 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 216730 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 216791 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 216852 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 216913 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 216974 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 217036 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 217097 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 217158 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 217219 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 217280 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 217341 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 217402 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 217463 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //