Array 1 3724-7784 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCN01000022.1 Salmonella enterica subsp. enterica serovar Havana strain 82-0493 NODE_22_length_33792_cov_3.62875, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3724 29 100.0 32 ............................. CTCTTTCATGGTCGTCGGTTTGATAAGCTCGG 3785 29 100.0 32 ............................. CCCGTATTCGCTATCGCCTCCGAGATGGTCGC 3846 29 100.0 32 ............................. CCAACGAAGTAGAAGCGCCCCCGGTGCTGGTG 3907 29 100.0 32 ............................. TTACTGTTTTTATTGGGTTTTCTTTTTATCTC 3968 29 100.0 32 ............................. TGGTTCTCCAGTCTGGAATTTCGCCGTCAGGG 4029 29 100.0 32 ............................. CCGCCGGAACTGAAAGAGGATCCGACGGGCGA 4090 29 100.0 32 ............................. ATCACAAGAAAACTTGATACTCGATTATCGCT 4151 29 100.0 32 ............................. GCGGTAAACAAATAAACATTTAATTAAATAAT 4212 29 100.0 32 ............................. TTTGGTTAGACTGCGTGTTAGTCATAGTTTAA 4273 29 100.0 32 ............................. GGGGGCAATGACGATGACGGCGCGGCGAGATG 4334 29 96.6 32 ............................C GCTGGCGCGGTCACCTCTTCCCCTTCTGGGGC 4395 29 100.0 32 ............................. ATGACTGGTGAGATCGCGTGTGCGGTATACCA 4456 29 100.0 32 ............................. TGACGCTTTTTATTGATTCATTTTGCGATACG 4517 29 100.0 32 ............................. CGCAGCGCCGCGCCGGCATAACTGACGATCAG 4578 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 4639 29 100.0 32 ............................. ACCCACTCCCACCTGCGGAAATTGAAACTACA 4700 29 100.0 33 ............................. CCCGCAAGGGCTTTTTTTATGCCCGGAGTAAAC 4762 29 100.0 32 ............................. TGCTTCAGGCTGGCTTAATCATTACGGCTTGA 4823 29 100.0 32 ............................. AGTACAATGAACTGATCTCAGCGGCTAAAACC 4884 29 100.0 32 ............................. CCGCGGCTTACCAGGTACTTTTCACCGTCCGT 4945 29 100.0 32 ............................. GCTCAGAAAGGGGATAAAGGGGACAAAGGCGA 5006 29 100.0 32 ............................. CGACTAGCTCAATACTTTCAAGCGGCGCGAAC 5067 29 100.0 32 ............................. CCGAATACAAAAAACCCCGGTTGGTAGCCGGG 5128 29 100.0 32 ............................. CGACGAATGCGTTCATTGAGAATAGCCAGAAC 5189 29 100.0 32 ............................. TGACCAGAGCAACGGCGACGATCCGTATACGA 5250 29 100.0 32 ............................. TTCCTGTCCGATCTGAGCGTGACCGGCGAGGA 5311 29 100.0 32 ............................. GGGTCGTTTTAGAGGAACTATTGAGGAATTTG 5372 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 5433 29 96.6 32 ............................T TTCTGTTATTAATTGCCATTGGCCACCACACC 5494 29 100.0 32 ............................. GGTAAAACGGTGGAACAGTGATTTTAGCGTTA 5555 29 100.0 32 ............................. ACTGTTTCTATAACGGTTCGTAAACCGTCATT 5616 29 100.0 33 ............................. GCTTCAACAGCAACAGGCTCAGGCTCATATGCC 5678 29 100.0 32 ............................. GATACATTATGAAAAAAAGCATCATTGCCGCC 5739 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 5800 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 5861 29 100.0 32 ............................. TTGATACGAGGCGTCGAAACCTCTTCTTAACG 5922 29 100.0 32 ............................. TCTCCCCCCGCGCCGTTTGAATACCATTTCCA 5983 29 100.0 32 ............................. GGGCGTTTAATCTTATCTCGCCTGTTGATTTT 6044 29 100.0 32 ............................. GCGGATGAGTGTGGGGCTGTTGCCAGCGTCAT 6105 29 100.0 32 ............................. TGTAGCTCCCGGGAATCGCGAACTCGTTACGG 6166 29 100.0 32 ............................. GTGTTCACATCCAGATAGCTGTCGTCATCAAC 6227 29 100.0 32 ............................. TGCGGCCCGTCTTTTAGCGTTTTCCAGTCGCC 6288 29 100.0 32 ............................. GGAATATGAAAATTATTATTTTTGCAACTGCA 6349 29 100.0 32 ............................. AATCTAAACAGTAATTTAAAATTGTTAGCGTC 6410 29 100.0 32 ............................. CTGGCCGGGTTACAGGGTGGCAGTGAGAAAAA 6471 29 100.0 32 ............................. ATCCTCGAATCACTGGCGGTAAAAAAACGCAA 6532 29 100.0 32 ............................. CGCAAACCAGACTGGCAAATAAAATTAGGTGC 6593 29 100.0 32 ............................. GATACAACGCCGTTTTTACGCGTTGTGATGGA 6654 29 100.0 33 ............................. AATAAACCAGTTCTTTGCAGACGTAGGTTCCGC 6716 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 6777 29 100.0 32 ............................. TAGCTATGACAACTAAAGACGACACAAACCAA 6838 29 100.0 33 ............................. ACGGAAATCCGCGTGACCTACAACGGGCACAGG 6900 29 100.0 32 ............................. TCGCCGTTCTGGCGTCTGATTAAGGCAATCGT 6961 29 100.0 32 ............................. CTGTTTTCATTAAAAATCACCTCCGTTATGGT 7022 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 7083 29 100.0 32 ............................. CGGGCAAATGCCCGCTTTCTTGTTTCTATCAG 7144 29 96.6 32 ............T................ TGCCGCCGTCCGGGCGACGGGAATAATGTGGC 7205 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 7266 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 7327 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 7388 29 100.0 32 ............................. ACCCGACACGCGTGCGCGTATTTGAGAATGAC 7449 29 96.6 32 ............................T CGTCGACAAGTTACGACCGGACTTATTCGCGC 7510 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 7571 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 7632 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 7694 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 7755 29 93.1 0 A...........T................ | A [7781] ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAACCCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-791 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCN01000396.1 Salmonella enterica subsp. enterica serovar Havana strain 82-0493 NODE_396_length_806_cov_3.214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. TGTGAGATACCGGCGCGGCCCGTCATGACGTC 92 29 100.0 32 ............................. TTTATGCCGAAGTTAACGGGACAAGAAGCGCA 153 29 100.0 32 ............................. TGAGATCGGCAATTGCTCTCTGGAGTTGCCAT 214 29 100.0 32 ............................. GCCAGACAACAGCAGACACCTACGCAACTGCA 275 29 100.0 32 ............................. ACAACTTCAAACGGTGATAACCAGGAAATAAT 336 29 100.0 32 ............................. TTAGCCTCAACGTAAAATCCTGGGCTTTAGGC 397 29 100.0 32 ............................. ATCGCGTTTTCCCTGGCACTTAAGGAGGTTTA 458 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 519 29 100.0 32 ............................. CAGGTTTATTTTCCGCGCGGGCAGGCGCTGGA 580 29 100.0 32 ............................. TTATCAGCACATAACGGAGAGCGAGGCGCAGT 641 29 100.0 32 ............................. CGATTTATGTAAAGGGTGGCCTGGAAGGGGAT 702 29 100.0 32 ............................. ATTATTGATGGTCATCATCGTTTCCTGGGGGC 763 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTAGTTTATAAACAATGATATACGTTTAGTG # Right flank : AACGCTGTCAAATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11826-10700 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCN01000147.1 Salmonella enterica subsp. enterica serovar Havana strain 82-0493 NODE_147_length_11832_cov_4.22219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11825 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 11764 29 100.0 32 ............................. TGCCAGCTCATCAGCGCTCATAACGGGCTCCA 11703 29 100.0 32 ............................. GCATGACTGTATGGCGTACAAACTGGATAGAT 11642 29 100.0 32 ............................. GATCGTGATTACGCTAAATATTTAATGAGAGG 11581 29 96.6 32 ............................T GCCGATTCAATAAAAACAGATAATCTGGCCGC 11520 29 100.0 32 ............................. GCTGTTATCGCCAGTATGGGCGGCCTGTGGTT 11459 29 100.0 32 ............................. AGGATCTGTCCCAGCAGGGCGTCTGCACGTTT 11398 29 100.0 32 ............................. GTCACTTGGGGCAACTTCAAGAATACTTCTGT 11337 29 100.0 32 ............................. CGCAGGTATCACCTCCGCCATGGGGATCGCGC 11276 29 100.0 32 ............................. GCCTCTACCACGGAGCAAAAATGATAAGCGCA 11215 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 11154 29 100.0 32 ............................. CCGTAGCTTGGTTGTGGACTCATCCTAACGGG 11093 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 11032 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 10971 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 10910 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 10849 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 10788 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 10727 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCTTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGCCCCTCTACCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //