Array 1 539021-539784 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QNGY01000001.1 Enterococcus faecalis strain 24393 NODE_1_length_1379581_cov_56.4186, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	=====================================	==============================	==================
    539021	    37	 100.0	    29	.....................................	ATGAAGAAGAAAAAGAAGAATTTGAGCTA 	
    539087	    37	  97.3	    29	....................................C	TAAAATTGGCAAAGTTACACCCTTGGTTA 	
    539153	    37	 100.0	    29	.....................................	AAAAAGAATTTTTGAGAAGGTGCGTTGCT 	
    539219	    37	 100.0	    30	.....................................	GAATGTTTAGTTCTGGGTATCTCATATTTA	
    539286	    37	  97.3	    29	....................................C	GTGTCGTAAAGCTCGACACCGTCAAAACA 	
    539352	    37	 100.0	    29	.....................................	GAATCACTTGAATTATTTGTAGAATCAAT 	
    539418	    37	  97.3	    29	....................................T	CTAACGAAATTCAGCGCAACTGACGGCGC 	
    539484	    37	  97.3	    29	....................................C	AGAAGAAAAAGAAGCTTTAGAGCCAACAT 	
    539550	    37	  97.3	    29	....................................T	CACACAGGAGGACAAGACAGACCCCCTGC 	
    539616	    37	 100.0	    29	.....................................	GATACCCCTAAATTTCGTACGTCGACCCC 	
    539682	    37	  97.3	    29	....................................C	CAAGTTGGTACGATTACTCAAAAATTAGA 	
    539748	    37	  67.6	     0	......T..C.........A.A..ACAA..T.TC..C	|                             	
==========	======	======	======	=====================================	==============================	==================
        12	    37	  95.9	    29	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA	                              	       

# Left flank :   TGTATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCTCAAACTCTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG
# Right flank :  CTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAATCCAATTTGCGATGACAACAGTTTTCCACTTTTTCTTCGTACCGTTTTCAATAGGATTAGCACTTG

# Questionable array : NO	 Score: 5.98
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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