Array 1 1073050-1074358 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWL01000001.1 Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1073050 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 1073111 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 1073172 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 1073233 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1073294 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 1073355 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1073416 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 1073477 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 1073538 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 1073599 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 1073660 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 1073721 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 1073782 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 1073843 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 1073904 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 1073965 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 1074026 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 1074087 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 1074148 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1074209 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1074270 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1074331 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1090982-1093513 **** Predicted by CRISPRDetect 2.4 *** >NZ_APWL01000001.1 Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1090982 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1091043 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1091104 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1091165 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1091226 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1091287 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1091348 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1091409 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1091470 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1091531 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1091592 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1091653 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1091714 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1091775 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1091836 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1091897 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1091958 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1092019 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1092080 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1092141 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1092202 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1092263 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 1092324 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 1092385 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 1092446 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 1092507 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1092568 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 1092629 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1092690 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 1092751 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 1092812 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 1092873 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 1092934 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 1092995 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1093056 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1093117 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1093178 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1093239 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1093300 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1093361 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1093423 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1093484 29 96.6 0 ............T................ | A [1093511] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //