Array 1 85150-86140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIS01000054.1 Serratia marcescens strain 398_SMAR 428_94755_1244314_328+,...,156+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85150 28 100.0 32 ............................ GTTTGATAACCGAAATAGCCACCTAATACGGT 85210 28 100.0 32 ............................ TCTGCGTGTGGAATACACCAGCGTGATGGCAC 85270 28 100.0 32 ............................ TATGTCGATCGTTTGGTGTACGCGCAATGACG 85330 28 100.0 32 ............................ GGCCATCTTCATCAATACGCCTTCCATGCAGA 85390 28 100.0 32 ............................ CTAGTGGGGCGGTCACTTAAAGATCTGCATGT 85450 28 100.0 32 ............................ TCAACAAGCCGGACTGGGCTAGGTAGATATCT 85510 28 100.0 32 ............................ GTCCGGGGTGGTCTTGTCCGCTTCTTTCTTCT 85570 28 100.0 32 ............................ GGAGAGTGGGGATGGTCACGATACCAGACGAT 85630 28 100.0 32 ............................ AGCGAATGCTACGGAAACTCTAAGCTATGATT 85690 28 100.0 32 ............................ ATGCTGCGCAGAACGGCCAGGCTATCGCTACG 85750 28 100.0 32 ............................ ATAGCGCAATCCTTCACGCGATTAGCGTATGC 85810 28 96.4 32 .........................C.. TGAACCTCACGCGCGCGTGCGTACTGTTGCAT 85870 28 100.0 32 ............................ AGCACACCGGCAACCCAGGGGGCATAGTCCGG 85930 28 100.0 32 ............................ CATGAATCCGCTCTGCTGGCCGATGTTTCAAC 85990 28 100.0 32 ............................ AGAACAGTGAGCTTACACAGGAAGCCGTTGAA 86050 28 100.0 32 ............................ ACAACGCCCCCGTCCAATTATCTCGGGCAGAT 86110 28 96.4 0 ....................A....... | A,A,G [86130,86133,86136] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCACCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61279-59772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVIS01000012.1 Serratia marcescens strain 398_SMAR 357_61537_837067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61278 28 100.0 32 ............................ TATCAGGCAAATCTGACGGCACGCTGCCCGGA 61218 28 100.0 32 ............................ CAGCCGCCCATCTCTTTAAGGGCAAGCAGGGA 61158 28 100.0 32 ............................ TAGCCGTCCGCCCCTTCTTCGCACATCGCGTC 61098 28 100.0 32 ............................ CGGATAGTTGCCGCCGGTGATGTGCAAGAGAT 61038 28 100.0 32 ............................ AGGCAATCATAGACATACCGAACGGCCAGCGT 60978 28 100.0 32 ............................ TGAACCAGGCGTATCGAGAAACAGGCGAACAG 60918 28 100.0 32 ............................ TGTAAGTGGCGGTTACAAGTTGGCAAGTGGCT 60858 28 100.0 12 ............................ CACATCGCCCGC Deletion [60819] 60818 28 96.4 32 T........................... ACGGTATGCGGCTGACGTTCGGCGAGGCATAC 60758 28 100.0 32 ............................ AAACACATGCTGCGGCTGCGCCGGGAAAATAT 60698 28 100.0 32 ............................ TGCTCGAACTAAACGGAAAGATACCCGCGACA 60638 28 100.0 32 ............................ AGGAATCGGCGGCAGGTTTTCAAGTCGGCGAA 60578 28 100.0 32 ............................ AAACAGCTTGCTGTGCCGTGTTACTCGCGACT 60518 28 100.0 32 ............................ GACACTGGGCCGTCGTTCCAGAGCATGAAATC 60458 28 100.0 32 ............................ CGTCTCCGCCGTCTGATATTGAACCGTAAGGC 60398 28 100.0 32 ............................ TACTCGACTAGTCGCCCGCGTGCGGTCGCCAA 60338 28 100.0 32 ............................ TGGCTGAAATATCTCATAGCTTGCGCCGGCCA 60278 28 100.0 32 ............................ GTTGACGAACACCCAGCGCGGCAACTGCTGGC 60218 28 100.0 32 ............................ GTTATATGAGAGGTTTCCGCCGATTGTTACGC 60158 28 100.0 32 ............................ CACGAATCAGGAAAATGCACGATTGCACCGGC 60098 28 100.0 32 ............................ GTTTTCGCCTGTGGCCGCTCAACCGGTGATTA 60038 28 100.0 32 ............................ AGTGCGGCCGTCAGCGTTTCGCTGCCGGTGCG 59978 28 100.0 32 ............................ AACAAGGCCGCCGCCGTTCCTGAAAATACCAC 59918 28 100.0 32 ............................ TGATGAGCGGGGCGGCGCATCCATCGCGCAGT 59858 28 96.4 32 .................T.......... AACTTCGGCGGCGCGCGCATCACCGGCAAAAT 59798 27 85.7 0 .............C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.2 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTCAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAAGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTC # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACTGGGAAGCAAATACCCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGTAGCGCCTTGGCGCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCGCTCGGCAAACGCAGCATATAGAGGTGCCAAACTGGAGTTGTCATCGTTCTTCCGAATTAGATAAGGCCACAGTCTGTCGCTAGAGTGCGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTTATCATCAACTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //