Array 1 8051-7778 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOT01000067.1 Nocardia sp. CY15 Scaffold63_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8050 29 100.0 32 ............................. ACCAACAACAGCAGACCTCCGGCCGGTTGCGG 7989 29 100.0 32 ............................. CGATCGGTCAGCTGTCGCGGTGGTCGCAGTAC 7928 29 96.6 32 ............................A CGGCTTCGGCTGCCGTCGCGTGGCGGTGGGCG 7867 29 96.6 32 .................A........... TACCGGCGCACGCACTCGAAGGCGATCCAGGT 7806 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : GTTCGAGCGATCGGTGGAACGGTCCGGGTCGCCACCGCAGGTATTTCCACTCGATCTCGCCACCCAGTGCGGCGAGCTGCTCGCGCAGGATCTGCTCGATGACGTTCTGCGGGATGTAGCCGCAGCCCGACAGAATCACGGGTCCGGACGGGGCTTGGCAGGGCTCATCTCGTTCCCTCCTGCGTATTGGACAAGGTCCGAACGAATTTCAGGCGTGTGCCCCATACGCGATGGTGGCACGACGATTGAACGCGCATAGCAGTCCGGCTGAGTCCACTTGACTCGCGGAATCCCGCTTGGGCGAGGGGACACTAATCGTCTGCTGGGGAGGTGCTGTGTCCAAGCACGATAGATGCGCTGGGGGCGACGACCAAGATCATCGAACGACAGGTCACCGTTCACACCGCACTTACACAGCACCACCACAACGCGACCAACCGACCCCGAACGAAGTGAACGAAAGGCGGGGTATCGTCACATAAATCCGCAGCTCAACAAGT # Right flank : CTGTAGGAGTCCAGCGGGATCCAACGTGGCACAATACGTGATTCGCTCGTGCCCGGCGTGGTTGCTGGTCAGCCATCGCTACTTGTCATCAAAAGCGCCATTTAATGACTGACGTCAACCAACGAGGCTCGCACCCGCCAACGCCAGCAATCGATGCTACAGCGGGAGTGGGTGGGTGTTGGAAGTATCCGCAGCTGAGCGGCCCAATGCAACCAACTGACTCCAACGCGGTCCGCTCTTGACAACGATGCCAATCGCAAGTTAGTTCGATGCGAGTACATGGAGTTACCTATGTACTCACGAAGCGCGCGGTTCATCAATGATAGTGACTCACCTCACAGTGCCTACGCGCGGGTAGATGACCTGCCGCGTAGGCTCCAGGCCATGCCTCAGACGACGGCGACACCGACCAAGACGACGGCAACGGCCAGGGATGGAAACGGGCTCATGAACACCTACGCATTGCGCCCCGATCGGTTCGACCGAGCAGGCCAGGACCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 755-137 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUOT01000075.1 Nocardia sp. CY15 Scaffold71_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 754 37 100.0 35 ..................................... ACCGACTGGTCGAGCTCCTCGCGGGCGACCATCTC 682 37 100.0 35 ..................................... ACCACCACCGAGGACGTGCTCAGCCAGCTGACGAG 610 37 100.0 36 ..................................... GAGCCCCACCTGGACTTGCTGGACCGCATCAACGAC 537 37 97.3 37 .................C................... TACGGCTCCCATGGCCCCACCTCCGAGATCGCCAGGG 463 37 97.3 35 .................A................... ATTTCCGGGCACCGCGCGGTGCTGGTGCGCAGCGT 391 37 94.6 35 ................TA................... CCGACCGGGCCGGGTCAGATCTGCGGGAACGTGGT 319 37 97.3 35 ..........T.......................... ATCTGCCGTCGGGTCATGTTTCCGCCGCTGAACAC 247 37 83.8 37 .........AA...T.....T.A...T.......... CACTTCGATGAAATGGACAACGCGCACCCTTCGATGC 173 37 89.2 0 ...........T........T.AT............. | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 95.5 36 GTGGCGGTCGCCCTCACGGGCGGCCGAGGATCGCAAC # Left flank : GTGGCATCGGACACTTCAGCGCCCCCCTGGCCACCCGCACCGGTGTCACCACCGACGACCTCGCCCTGCTCTGGCGCTGCATGACCCTGATGTTCGAACATGACCGCGCCTCCACCCGAGGCGAAATGGCCCTGCGTGGCCTCTACATCTTCACCCACCACGACGCCTACGGAACCGCACCCGCCCACACCCTCACCGACACCGTCCACATCACCCCCGACACCCGCCAAACCCCGACAACCCCCATCCGCAACTTTACCGACTACACCATCACCATCGACGAAGCCGCCATCCCCGACGGCGTCACACTCACCAGAATCGTCAGATAGCCCTGGCTACCCGCCGATGAACACACCGCAGGCGTTCCCACACTTAAGAACCCCCAGTGCACACGGATTCCCAAGGAGGTTCCGAACTGACGAACAGCAGTTATGGAAACCGAGGCGCCCCAAACAGACTCCGTCGCGGGGCCCGGTCGACGTTCGCCCAGTTCGCGCACC # Right flank : CGTCGGCGACTGTCGCGTCCGGCTGAATACTGACCCTCTGGTTCCGGGTGAATGTTGACCCACCCGTGAACGATCATGAGGTGCTGAACGTGGAGGACTGGGCGGAGATCCGCCGGTTGCATCGCTCGGAGGGGATG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCACGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.00,-16.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //