Array 1 130169-131180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYK010000012.1 Enterobacter chengduensis strain IR5473 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================ ================== 130169 28 100.0 32 ............................ AGGAAGGGGAATTGACCACGGTCAAAGAGGTA 130229 28 100.0 32 ............................ TTGACTTTAATCATTCTGCTTTCCGTGACGTC 130289 28 100.0 32 ............................ GCCAGCAGAATAAGGTTCAGACTCTAAATAAG 130349 28 100.0 32 ............................ CTGCCGGGGGCTGCTCTGGCGCCTGCGGCGCC 130409 28 100.0 32 ............................ AACAAGGTATTCCGCGGATGTTCTCAAGACAA 130469 28 100.0 33 ............................ TCTGCTGGCTGGCTAACAACCTGCATCATTGCC 130530 28 100.0 32 ............................ TCTTCATTTGGTCATAACCTCTTTTTTTAGTT 130590 28 100.0 32 ............................ TGGCCGCCGTCGCTAAGCAGCACGCTATCTCT 130650 28 100.0 32 ............................ GACCGGCTCCGTCGTGGACTGGGCGAAATGGT 130710 28 100.0 33 ............................ CTGAAGGTATGGGAGAAGAACGGTTATCGCCGC 130771 28 100.0 33 ............................ GGATTGGTCGGCACTTTCGGCGCAAACTGTGAT 130832 28 100.0 33 ............................ TGTCCAGCTCCAGTTCTCCCAGGATGGACTTGA 130893 28 100.0 32 ............................ CAGCGCGGTGCCGTACCACGTCAGCCGCAGCA 130953 28 100.0 32 ............................ GTACGAGACTGGTGGGCCTTCGCTGAGAAATT 131013 28 82.1 112 .....................AATC.C. CCTGGTTATGTCAAACACTGTGCCGCCTGATTATAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAAATAGCCAACATGGGGAAAGTAGGAACAGAGTCAATTAAGTTTT 131153 28 82.1 0 .....................AATC.C. | ========== ====== ====== ====== ============================ ================================================================================================================ ================== 16 28 97.8 38 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGGTTTGCACAAGCTTTTTGGCGGCGTGGGCTTTATTAGCGGCATGCTGGTGGAAAAAGGATTGCCGGGATTTATCGCCTACGGCGTGTTGGTTGGTGAAGTGGTTGCGCCGATCCTGATTATTATCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATTGTGGCGTGGCTGATGGTGGGAATGGGTGAAACGCTCGCCCTCGATAAGGTAGGTGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGTTTTGCGCTGGGGAAAGACCCGGCGTGGCGTTGAGGTTTGGGCTATGGCATGAAGGAAGGGGTCTACGGACCCTTTTTTATTGGTGATTTTTAACTCATTGATTTTATTGGGCTGAAATATATGCGAAGAAAAAGGGGTTGAGACGATTTTTTAGGTAATTTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : ACCTGGTTCTGTCAAACACTGCGCCCCCTGATTATAAACCCGGTGGCGCTGACGCTTACCGGGCCTACGAAGAGCCAACATGGGGAAAGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAACGGCGGCACCGCGTCAGATTATACGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCCGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACTACCTTCGTCTTACAGCAGCCGCACACGCCGGCGCGGCAGGCGGCCACGACAGGCACCTTGTTGCTTTCCAGCGCCTCCAGCAGCGTGGTTCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGTAGCTTAGTGAACTGAATCCCGCTGGTTGCCGCCTCCGCCACGGGCGTGAAGAACAGCTCCTTGAAGAAGCGGGTCACGCCAAGCGCTTTCACTTCTTTCTCTACGCTGTCCATGTACGGC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 315164-314420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYK010000001.1 Enterobacter chengduensis strain IR5473 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 315163 28 100.0 32 ............................ TCATCTTGTTTCGCTCGTTTACCAGGTCTACT 315103 28 100.0 32 ............................ GTGGGACAAGGTGACGCAGTCGGTACGCCATA 315043 28 100.0 32 ............................ ACTTTAGAGAGAATCTGGGTAAAGCCCGTCAT 314983 28 100.0 32 ............................ ATTGACCGTCTTTCTCGTTCAACGATGGACTT 314923 28 100.0 32 ............................ GAAAACGAAGCCGCCAGAGAGCTTACCATCAG 314863 28 100.0 32 ............................ TGATACAATCTTTCGGCAAATGTACCGATTAA 314803 28 100.0 32 ............................ GTCAGGGCATGGTGTGCAAACTAGCGGGGCGA 314743 28 100.0 32 ............................ TGCAATGCGACAGGGACCAGGAGAATATTCGG 314683 28 96.4 32 ...........A................ GCACGTTTGATGCCCGGACGCGACGCGCCCGC 314623 28 100.0 32 ............................ GACAGACGGGCGCGACTGCTTCGACTGATAGA 314563 28 92.9 30 ............G.........C..... AGGGAATGGTCACCATCACCACAGAAGAAA 314505 28 92.9 30 ..............CC............ ATAGAAAATAAGGTCTCTTCCCCTTACTTT C [314480] 314446 27 75.0 0 C.A.....T..A....A....C.-.... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACGGGCCACGCGTTCGCTTTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCTACGTTACGTTCATTAATTCCGGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGGATATTGTCGAGCACGCTGACGGGTAACCCCTGATTGAGAAACTCAATCAGCCGCATACCCCTGTTTGCAGGTAAACCAGCGTACCGCCAAAGCGCGTTATCAGCAGGTTGTTGGGCGGGGATCCATGTTCTCATGTTACCTCCTGGTGAGTGTCATTTGTCATGGCTAAGTATAGTCATTTGTCAGGTGGAGTGGAATGGCGTTTTTTTATACTGGGTGGTTTAAGAGAAGATGGCGTTTGACCCTAATTTTTAGGGTGTTTGTAATGCATTGATATTAAATGGATATTTGAGAGGGTAAAAAAGAGGGTAAAAGAAGGGGTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGAAGATATTATTTCA # Right flank : CGAACCGCCAAATAATTGTTCAAATAATCGACTGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCATTTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACGACAGGATAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 325822-324653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYK010000001.1 Enterobacter chengduensis strain IR5473 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 325821 28 100.0 33 ............................ CTGGGTTAAACTCCATGCCTCGCTTCTCTACGT 325760 28 100.0 32 ............................ TGAACTTCTTTACCGGCTATGATGCTGCCAGC 325700 28 100.0 32 ............................ GTAACCGGGATTAAAACGTCGCCGACCAGCTT 325640 28 100.0 32 ............................ CCAGGCTGATACTGCGTTACCAGTGCCGGACA 325580 28 100.0 32 ............................ GATACACCCAGGCATGGGGTTTCTATCGTGGT 325520 28 100.0 32 ............................ ACAACCATTTTTGATAATTCATTTTCTACCTC 325460 28 100.0 31 ............................ AAAAGCAAGCGGTGACGCGCAGAGCCAGGAG 325401 28 100.0 32 ............................ ATCACCGCAACAGCGAGAACGGCAAGTTAGCA 325341 28 100.0 32 ............................ TACTCGCTCAAGTTGTTTCGTTGATACGTGGT 325281 28 100.0 33 ............................ CCTGAACCAGTCAGCGCCGCTGTATGCCCCGAA 325220 28 100.0 33 ............................ AGTACAATACGGGGCCTGGCCAACACCGGCGAT 325159 28 100.0 32 ............................ CGCCGCTGGCGTTAATTGTAATTGTCATATTG 325099 28 100.0 32 ............................ CCCTCGTTTCTCTGCAATAACTTTGGCTATCC 325039 28 100.0 32 ............................ ATTCGAATCTCTGACTACAAGCGAAACATTGA 324979 28 100.0 31 ............................ TCGCACCACAACCCAATACGAGCCATAGCCT 324920 28 100.0 32 ............................ TGTCAAAACTCCAGTTTGAAACCAACGACAAG 324860 28 100.0 32 ............................ TGACCAGGCAGCTCGCCGCGCTGTCAGCTGAA 324800 28 92.9 32 ...T.............T.......... AATAACTGCTGCGCTCGATCGGCTGGTGGGTA 324740 28 100.0 32 ............................ ATCGAAACGAAACATCGACAACTGAGCGAAGT 324680 28 67.9 0 ...........C......T..CCCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCCCAAACGCATCCCGTATGCCGCTGTCTTGGAGCCTGGCTGGAAGAGGTGAAATCCGGGCTTACAGAATCAATGCGTGATTTTCAGGTGGTGGAATTTGAGGACGAAGTGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACCGAAACGAAATGCGACTACTGTCGGGCGTTAAACCATGTGCTGCTGGTGGCGAATTTTGACGGCGATATGTTGCCGCACATCACGGGGCTACTCCATGACATTACGCATTCTATGGCCGCAGACGTTGTTGCCCCTCGAAATGCAGAACCGGTAATTCACATTATTTCCTGAGTTCGAGCCCAGGCGTCGGGGGCATTTCTCTGACGCCGTTGCTGTAACCCTTTTTTTTGATGTATACGTAACGTATTGATTTATATGATGAGGATTTACGTGCCAGAAAAAAGGGTTTTATACGTGTAAGTTGATTATTTTGTTTGCTAACAATAAGATGGCGTCGTTTCTTTCCA # Right flank : AAACCAACCCACCGTATAATATTCACCAAACCAATTTAAAACCTAATCCCATCAAACCTGCACTCTCTATTTTCACAATAAATAAAAAACCCATTCATGCATGAATTATATTCTAACGAATATATTATTCGCAAAAATAATACTTCAGCTAAAAACATGATTTTCCACTTCATTATCACGGTGATTATTATTCATTTGATACCCGTCACATTTGTTTCCATCCGATGTTCGCTAACATATTGCGCATTCAACACCTTGAAATAAAAGCCCTTGCCATGTCCGTAAAGAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTATCTGGAGAAATGTCGTGTTCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGACAAGAGTCGTTTTACTGGAATATTCCCATCGCGAATACGACTGCGGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGCGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //