Array 1 63119-62371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAN01000040.1 Pseudomonas aeruginosa strain AZPAE12149 AZPAE12149_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63118 28 100.0 32 ............................ AGTTCGTCGTCGTGTGGCACGACCCGATCACA 63058 28 100.0 32 ............................ AACCGCAGATGACCGACAGGACGGCGATACCA 62998 28 100.0 32 ............................ ATGTAGTCGATGATGCCGTTTGTGAGGGTGGT 62938 28 100.0 32 ............................ TCGATGCCGTCGACGCAGATGATGCCCAGTTC 62878 28 100.0 32 ............................ TCCGTCAAGGCGACGATCCGGCACCGGCAGTT 62818 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 62758 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 62698 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 62638 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 62578 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 62518 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 62458 28 100.0 32 ............................ TGCGCCCTAAATCAGTGATCCGGCGAATTTGG 62398 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38184-39110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAN01000025.1 Pseudomonas aeruginosa strain AZPAE12149 AZPAE12149_contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38184 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 38244 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 38304 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 38364 28 100.0 32 ............................ AGCTCGGCCAGCGCAGCCCGGCGCGCTTCGCC 38424 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 38484 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38544 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 38604 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38664 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38724 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38784 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38844 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 38905 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 38965 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39024 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 39083 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48380-47632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUAN01000025.1 Pseudomonas aeruginosa strain AZPAE12149 AZPAE12149_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48379 28 100.0 32 ............................ AGCAGATCCGACGGGTTGTTCGCTGTTCCGGT 48319 28 100.0 32 ............................ AATAGCCGGCCTGCGCATTCCAACGCCAGATG 48259 28 100.0 32 ............................ TGGGCGGTGCGGGTGTAGTTCTCGAAGGCGAA 48199 28 100.0 32 ............................ TGGTGCATACGCTCCGCCTCGATGATCAGGGC 48139 28 100.0 32 ............................ TTACTCGAACTTGCCGCCAGGCATCGATGCTC 48079 28 100.0 32 ............................ TGTCGCCGCTGTTCCCAGCCAAGCGCGTGGTG 48019 28 100.0 32 ............................ TCAATTGCAGATGGCTATGTTGAGAACTTTGT 47959 28 100.0 32 ............................ TGCGTGACCTGTTCTTCAATGGCGCCAACCCG 47899 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 47839 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 47779 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 47719 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 47659 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //