Array 1 1463064-1467353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061081.1 Marinomonas arctica strain BSI20414 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1463064 29 96.6 31 ............................T GTGAATCTTTCTTAGCTGCAAGTTAGCCTTC 1463124 29 96.6 31 ............................T GTTGCAAAGTGAGTGGTGACAGCATGGAACC 1463184 29 96.6 31 ............................T CCAAAAATATGTTTAACGGAATCCGTCAAGA 1463244 29 96.6 31 ............................T ATAATTCTCGCCAATTCTTCATCGCTAAGGT 1463304 29 96.6 31 ............................T AATCAGCAGTTCTACCAGTCTAATGCGTTGC 1463364 29 100.0 31 ............................. AGGCCAAAGCAAAACTGTCTTACCTGACCGT 1463424 29 100.0 31 ............................. GGACGGGCAACATTTACAGTAGAAAGCGCGG 1463484 29 100.0 31 ............................. ACGTGAATTTTACCAAAAATGTTCAATTCTT 1463544 29 100.0 31 ............................. AACGAGACATTGCGGAGTTGGTGAACTATGC 1463604 29 96.6 31 ............................G CATTGGACGTGTTAGAAGGCCCTATTGAAAT 1463664 29 96.6 31 ............................G ATAAAATCTAGTTCGTCCCACTTCTGGTTTT 1463724 29 100.0 31 ............................. AGGTAAAAAACTGTTCCTTTTCAGTCATCTT 1463784 29 100.0 31 ............................. CGGCCGCGCTCACAGCGCAGATCGTAAGCGC 1463844 29 100.0 31 ............................. TGCAAGGCATAAACGCCCGATATATTCATAA 1463904 29 100.0 31 ............................. CAAACCCCAAATCCATCAGCTTAAACAGCGA 1463964 29 100.0 31 ............................. CGCTTTGATCGTGTGAATAGAGCATCTTAGA 1464024 29 96.6 31 ............................T GCGGGGGTGTGTGATGGCTGACCACGTCGCT 1464084 29 96.6 31 ............................C AACGCGTTGCAAGATATGGAAGCGGTGCAAA 1464144 29 100.0 31 ............................. TCAATCAAGACCGCGCCACGTTCAATCATTC 1464204 29 96.6 31 ............................G CTATGCCGGCAACCGAACCCCACAGCACACT 1464264 29 96.6 31 ............................T TACGGGCGGCTCTGGTATTGTCATGATCACT 1464324 29 96.6 31 ............................T GAGTTTTGGCAAGATGAAGATCTTGCGGAAA 1464384 29 96.6 31 ............................C AACACGGTTTCAAGTCAAGTGAATGAAGTTT 1464444 29 96.6 31 ............................T GCATCTTAAGTTCCTCTGTTCGTTACCTACT 1464504 29 96.6 31 ............................T TTTAGAGCTAGCGCCTGATCTAGTGAAACAA 1464564 29 96.6 31 ............................G ACAAACACAGCAACTTCCCAACTTAATGCCC 1464624 29 96.6 31 ............................C GTTAAGCACCCATACAGCGCCAGCTAAGCCA 1464684 29 96.6 31 ............................G ATAATGTCTTTCTTTTCCACATCTTCAATAG 1464744 29 96.6 31 ............................G CAGATAGCTAGCATTAACTAGACTGTCTAGG 1464804 29 100.0 31 ............................. CTTCTTCAAGTGCTGTTTGTGCATCGGTTGC 1464864 29 100.0 31 ............................. TCTGATACGTTTGAATGCGCGGCAGTCCACC 1464924 29 100.0 31 ............................. GACGCATACGGGACATTTCGCGGTTTTGTCA 1464984 29 100.0 31 ............................. AAACCCTGTTTGATTACTGCGTTGTTTGATT 1465044 29 96.6 31 ............................G TGGCCGTGGTAACCTTCGCTTGAAATCATGC 1465104 29 100.0 31 ............................. AATGAAAAAAACGCGGTCCCACTTAGTGAAA 1465164 29 96.6 31 ............................C GCTGGCGCGGGCGGTATTACGTCGTCCTCTT 1465224 29 100.0 31 ............................. CGATAGCGCGATCTATTGAGCGTGGTGCTTA 1465284 29 96.6 32 ............................G CGCATACGTTTAGCGAACAATCCGAATATTCT 1465345 29 96.6 31 ............................G CCTATTTGTAAAAAGTAACGATGTTTTTAAA 1465405 29 96.6 31 ............................T GGTCCTTAGTAGCTCGACGCTCTATCGTTGC 1465465 29 96.6 31 ............................T CCAGGCTATACACCTGTTGATTATTCGCCAG 1465525 29 100.0 31 ............................. CGCGACCACACGCACATGGGATTTCGCCTAT 1465585 29 100.0 31 ............................. TTGCGCCGGATGGCGGTATCTACATTTTCAA 1465645 29 96.6 31 ............................G CCTGTTTACTGGGGTTTTCTTGTTTTTTTAG 1465705 29 96.6 31 ............................T TTATAACCTCAACCAAGTCACGCTCTTTTAT 1465765 29 100.0 31 ............................. TTCCAGCCGATACGGCCACCGCGAGACATAA 1465825 29 100.0 31 ............................. TAGAGCTAACATCTTTTAATACGCGGTGCAT 1465885 29 100.0 31 ............................. CGTCTACATAGAACAACAAAAAACAGGGGCT 1465945 29 96.6 31 ............................G CGCACGCCTTGGCCGTGGTTATTGACCTCCA 1466005 29 100.0 31 ............................. ATGTTGGTAAAGTCAAATGCGCTGTGAAATC 1466065 29 100.0 31 ............................. CAGCAACAGCACACCGCAATCCGTAACCGTA 1466125 29 96.6 31 ............................C GACTTATTAAAACGGATTTTGAGTTTTTCGC 1466185 29 100.0 31 ............................. GTGAACTGTTCAGCTTGAATCTTAGCAAAAT 1466245 29 96.6 31 ............................G TTATGACTAATGATAAGATTGTTGAAGTTGT 1466305 29 96.6 31 ............................G CCAAAGCCCACTACATCAGACGCTTTATCTA 1466365 29 96.6 31 ............................T AAACAGAAGGCAGACGCATGACGAACGGCAA 1466425 29 100.0 31 ............................. CCCACACGAAACGGCTTGACAACTTTATACT 1466485 29 96.6 31 ............................G TTAAAAAAACCATATCGATTATAAACAACCG 1466545 29 96.6 31 ............................G TTAAAAAAACCATATCGATTATAAACAACCG 1466605 29 96.6 31 ............................G TGATCGGCGGCGTTGCCCTGTACTTTATGAC 1466665 29 96.6 31 ............................T GTGTTAATAATAAGTGAAGTATCAGTTGTCA 1466725 29 96.6 31 ............................G TGATCGGCGGCGTTGCCCTGTACTTTATGAC 1466785 29 96.6 31 ............................T GTGTTAATAATAAGTGAAGTATCAGTTGTCA 1466845 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 1466905 29 96.6 31 ............................T CTACGTTAAAAGCAGAGCACACACAGTTATC 1466965 29 100.0 31 ............................. TGTCTGTGTTGAATAGAATAGGGCGCTCTTT 1467025 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 1467085 29 100.0 31 ............................. TGCAAGAACGAACCTTTTAGCTTTAACTTTT 1467145 29 100.0 31 ............................. TCAAACACAGCAAAGCTGTGGCTAGCAGTAG 1467205 29 96.6 31 ............................G TACAGCCCTTGGCGAATATCACCGCCGTTTA 1467265 29 100.0 31 ............................. ACTAGGTAGTTGGCGCTTGATCTTCGATTTG 1467325 29 75.9 0 .....T......G.....T......GTTT | ========== ====== ====== ====== ============================= ================================ ================== 72 29 97.8 31 GTTCACCGCCGAATACGCGGCTTAGAAAA # Left flank : TGTTAGACGTTTACATGTGACCAGTCTACCGATACCTCATGCTGGAGGTGTTTATGCAGCAAAGCCTCCAATAGAAATTATTGGTGGGTTGCTAGCGCTTGAAAATGAACAAAAAATGTCTGAAACGTTAAATCGTAATTTAGAACAGCAAAAAGAGGATAAAGGTCTCTTAAATATTGGCTGTGCTGCCGATGACTGCTTTTTCTTTTATGAGAAAAACCGTCATGAAATGACGGTAAAGCAACACTCTAAAGCCACGACTGCTTTTTTATTTGAGTTACTGTCACAGCTACAAAGTTGTGGAACCGTGCCTATGATCGATATACATGCTTATGGTCAATGGCTTAAATAGATAAGATACAAAAAATACCCTTTTTTTTAGAATAATCGTCAAACCCAGTAAAATAGGGGCTTGGCGACTCTCGATAAAAACAATGGTATTTTTGTCAAAAAGGTCAAAAGCTCTTTAACAATCAAATACTTAATGGTATTTTTTTATA # Right flank : TATGGGTTCCCACCTTCAAGGCTGTCATTAAACGCCTTCCGTCAGTCTTGTAGGTCGCGATTTATCCTGAAAAAAAAATAGCATGCCGACAAAAAACTCGCCACGACAAATTACGTCTTGTCGGGCTAAAGCCACGACCTACAAAAAAACAATATAAATCAACCAATTGTTGGCTAAATAATGTTACATGCCTGATCACGGTCGTACCTCCCTCATCATGCCTACAAAATATGCTCGCTACCTTTAACGACAGCCGTATTCAAGGCTGTCGTTAAACGACTTCCGTCAGTCTTGTAGGTCGCGATTTATCCTGAAAAAATAGCATGCCGACAAAAAACTCGCCACGACAAATTACGTCTTGTCGGGCTAAAGCCACGACCTACAAAAAACAATATAAATCAACCAATTGTAGGCTAAATAATCTTACATACCTGATCACGGTCGTGCCCCTTATGCAGCCTTAGGGTTTATTACCTATGGGTATCAACATACTCTTTTAG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAATACGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.40,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2403501-2403353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061081.1 Marinomonas arctica strain BSI20414 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2403500 28 100.0 32 ............................ ACCATCCGCGATTAACTTCATCGTTTCTTTGC 2403440 28 96.4 32 ........................T... TGCATGCATCTTGCCCTCTGTCGTATTGGGGT 2403380 28 85.7 0 .......................AG.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTGTCCTGCCGCATAGGCAGCTGGAAAA # Left flank : CAGCCGTATTATCAAGTGATGACAGAGAATGGACTTTTTGAAATAAGCGATCCTACTATTCTTGAACAATCAAACACATGTATTAAATACGTTCGAAATCAATCAATAGACAAACTAACACCAGCAGCTAAGGCTAGAAGGCTTCGTAGAGCAAAGAAAAGGGCACTTGCAAGAGGCGAAGAATTCAATCCTGTTGACGCTCAACTAAAGGAAGTTGATTTTTACCATTCAATACCAATGGATAGCTCACAATCTGGTAGGGCTTATATGCTGAAAATTCAAAGGTATGAAATTGATTTTCCGAAAAAAGAAGATATCTTTAATACATGCTCTTATGGATTATCAACGAACTCGCGGTATCAAGCGCTTTTACCAATCTAATTTGGTAGAAATAAAACGCATAAAAATCAAATGTTTATAAACAACCTGAGAAATTAGGTGTTTTGTATAAAGTTGGTCTATATTATTGTAAATTAAGACTATTTTTAAACTTTGCTGTA # Right flank : AGGACTGGAAGTAAGATTCCGCAACGATGAACATAAACCTACCGAAAAGGTAGATAAAGCCCACGGATGGGCAATTTCTATTGTTTATAATTTATGTAAGAAACATTGTTAAATGATAAGGAATAGCAGTAAGTGAAATTATACATCATTATTTGATAATGGGTTTTAATAGAATGAAGCATCGATAGGGTATTCATATAATATGAGATATTAATCCCAATATTGCTTAAAATTAAGTTGCCCCTCCCTAATATGTAGTATGCACTGACGTTTATTTAAAAAATGCTAATCTTGATCGTAAGTTGATAGACCAGGTGCAATGCCGCGACTCTCAACATCATACAAAGTCTGATGATTACGCAACCATAGCTGGTAATTATACCCCTTTAAGCTATGATCTTCCGTGCAGTCTACATTCCAGTAATGTAGCCAATAGCCCACTACCGCAGCTCTTACCATGAGTTTGAGTGCGCCATCCTTCATATCGAAATCATATTCTA # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCTGCCGCATAGGCAGCTGGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3347352-3341924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061081.1 Marinomonas arctica strain BSI20414 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3347351 28 100.0 32 ............................ TAGCTCTTGAATTGCGTTCTCGTTTCCCTGCT 3347291 28 100.0 32 ............................ TAACACTTTGCGACCTTCCTGAAAGATGTATT 3347231 28 100.0 32 ............................ TTGCACGCAAATTTCAGCATTCTAGAAATTTA 3347171 28 100.0 32 ............................ ACATTCTTCTTTCCAAGTAGATCCATAATGAA 3347111 28 100.0 32 ............................ ATTTATCTAAATCAGCATAAGAAAGCGCCACA 3347051 28 100.0 32 ............................ TAAAAAGGTGACTAAAAATGGCTAGAGGAATT 3346991 28 100.0 33 ............................ TGCAAGCTAACCCAACAACTGCAACAATTTACT 3346930 28 100.0 32 ............................ TGATGAATCTGGGTGCGTCTGGGTTGATGTAG 3346870 28 100.0 32 ............................ CCAATCGTAAGTATCAATAAAATCACCGCAGC 3346810 28 100.0 32 ............................ TCTATCATTAGGTATGTAAAAAGAAATATTTG 3346750 28 100.0 32 ............................ ACTTTGGAGGGGTATTTTCGAGGCTGCAGCTG 3346690 28 100.0 32 ............................ TGTCTGTTTTCTAAACCTCGGTTAAGTTGTGA 3346630 28 100.0 32 ............................ TGAATCTGCGCGTCCGTAGCTGTAACGTTTGG 3346570 28 100.0 32 ............................ ACTACCTGCATTTTTACAGCGGTGAAACCGCA 3346510 28 100.0 32 ............................ TAACGGATTATTTGCTGGCTATCGGGCCATGA 3346450 28 100.0 32 ............................ AGGCATTGACGACACCTATGGATTTTTCGCTC 3346390 28 100.0 32 ............................ GCAACGCTATTGCTCAACTGAGCAACCAAACA 3346330 28 100.0 32 ............................ GTACACACGCTCACGACAGAAAATAGATATGG 3346270 28 100.0 32 ............................ TTTAATCGTCGCACGCACCCCCAAACCATCAC 3346210 28 100.0 32 ............................ AGACACGTATCTTATGTGTCTTTCCGATTATG 3346150 28 100.0 32 ............................ GTCAATCCGGAAACCATCCATGAACCTGTCGT 3346090 28 100.0 32 ............................ AAACAACTATTAATAATGAAATGTTTACCTGC 3346030 28 100.0 32 ............................ TGACACGTCAACTTTTGGCGCTTCAACGACAG 3345970 28 100.0 32 ............................ TGCAATCATTGAAGCGTAAGTGTGGCCTTGTG 3345910 28 100.0 32 ............................ ACGTGTTGCCAGTGTGACACCTCACGCCAATT 3345850 28 100.0 32 ............................ TGTATTTTAGTTAATGTTTTATGTCTGCGTTG 3345790 28 100.0 32 ............................ TGCATAAAATGCTTTACGGTTAAACTCAACGT 3345730 28 100.0 32 ............................ TTTACCGTTCCAAGCACCACGTTTACACCATT 3345670 28 100.0 32 ............................ AATCACTAATGGCATGAAGCCAATAAGAACAA 3345610 28 100.0 32 ............................ TGAATACCGTAGACTAACAGCTAGCGGTATCA 3345550 28 100.0 32 ............................ TTTTAGAAACAACAAGGAAAAGATAAAGCCTG 3345490 28 100.0 32 ............................ GATATGACCCCATTCACCACCGCTGGTTTCTG 3345430 28 100.0 32 ............................ TGTACTTATAATAAAACGTTCGTACGAGTATA 3345370 28 100.0 32 ............................ GTTTAAGATTGGCAAAAAAATCTTCTCATACA 3345310 28 100.0 32 ............................ ATCTAATACATTGCAACTAATTAGTACAAAAT 3345250 28 100.0 32 ............................ AGTAATCACAAGCATGGGTACACTAGAAGACA 3345190 28 100.0 32 ............................ CAGAGTAATTTTCGAAGATACACTTCGGGGCA 3345130 28 100.0 32 ............................ GAACCGCATGGAATGCAGCATCACCCTCGCTA 3345070 28 100.0 32 ............................ TAGTAGATAATGCCCGTGGCGGCAGTGTCTTA 3345010 28 100.0 32 ............................ GCAGACTTAAAAGCCTTGCTGTCCGTAAAGGT 3344950 28 100.0 32 ............................ TCGATAATTAGTATCAAGCTGGGTATAAATTT 3344890 28 100.0 32 ............................ TGATTGCGCGCCGTAAACTTGGCGTGATTCTT 3344830 28 100.0 32 ............................ ACTATATCGGTCAATACATCGCCTGTCTGTCT 3344770 28 100.0 32 ............................ TAATGGAGGGTGAGGCGTTGAGCCTTAACTCT 3344710 28 100.0 32 ............................ TCGCGCTCTAGCCACTCGATAGAGCTAAACAC 3344650 28 100.0 32 ............................ TCATCAATCCATGCTATTAATATTCGAGCCTT 3344590 28 100.0 32 ............................ ATTAGGGCGCTTCCAAAGCATAAAACCAAAAA 3344530 28 100.0 32 ............................ TACTTGATGTAACTGGTCTGAGTGACACCATC 3344470 28 100.0 32 ............................ AAAAACAGCGTCGTCGTCAGAATTGCCTTGAG 3344410 28 100.0 32 ............................ AGACCTCAATCGAGACGTACCGAATTCCATCC 3344350 28 100.0 32 ............................ TAAGTTACTGACAACAAACGATTTTTTGTTTT 3344290 28 100.0 32 ............................ TACAACTATTGATACACCTTTCTCGTCTTTGA 3344230 28 100.0 32 ............................ AGCACGACTTAATGCTATTCGACCACACGACA 3344170 28 100.0 32 ............................ TTTATACGTAGAAGTGGCTGAAAAACAAGGTC 3344110 28 100.0 32 ............................ TTTTACTGCCATGAATCATCATGTTGCTAAAC 3344050 28 100.0 32 ............................ AGAATGTTCATACGGGCAGACGAGCCGCCCTT 3343990 28 100.0 32 ............................ TATTGCCTACTGACGTGTACATTGGCCTAATC 3343930 28 100.0 32 ............................ TATGCACTTAGCAGTACTTAAAGCAACTAAAT 3343870 28 100.0 32 ............................ GTTATTTGGCCCCATACTTACAACAATTTCGC 3343810 28 100.0 32 ............................ TTTTTCATTGCAGGTATAAAAGTTTTCAGTAT 3343750 28 100.0 32 ............................ TTTTGTATTCCCAAGCCTTTGCTTTGCTATGA 3343690 28 100.0 32 ............................ TGAATGATAAAGCGGTAATTAAATGTTATCGG 3343630 28 100.0 32 ............................ TGTAGTTGGACGGGCGCGTCTTGTTCGGTAAT 3343570 28 100.0 32 ............................ TTCACAAAGAGCTTGTTCGATGGTTTCGTCTG 3343510 28 100.0 32 ............................ CGTGGACTTTGTTCGTTGGGTGAAAAACGATT 3343450 28 100.0 32 ............................ AAACCAACAAAACGCGCACATGCTGGAAAGTC 3343390 28 100.0 32 ............................ TCTTGTTTAGTGTCGAAGACAACAGTTTGCTC 3343330 28 100.0 32 ............................ AGATACTTCACACTGATATACGCATAAGAATA 3343270 28 100.0 32 ............................ CTCTCCAAGTAGATCGAGCAAGACCTTTTAAG 3343210 28 100.0 32 ............................ TTTAGGTATCGGGGCTTTTTTGTGCCTTGACA 3343150 28 100.0 32 ............................ TGTTCAACGTCGGATGCTTCCCATGACTTACT 3343090 28 100.0 32 ............................ CTTTATGGTCAGCACTTGGCGCCCACGCAAAA 3343030 28 100.0 32 ............................ ATTATCGACAACCCGAAAAAAGACCAAATCGA 3342970 28 100.0 32 ............................ GTCAGGACGATTACCAAAGGGCTTCCCGTCTA 3342910 28 100.0 32 ............................ TACTGATAAATATAGAATTATAAAAAAATAAA 3342850 28 100.0 32 ............................ TAAAAACCGTGGGTGAGAATTTTATTAATCTC 3342790 28 96.4 32 .........A.................. TCCAATAAAAGCACTGTACGCAGTACCAGCCT 3342730 28 100.0 32 ............................ ATGAGTACGCACCATATTAGCGGAATGGATGT 3342670 28 100.0 32 ............................ AGCACGTCACCCGTAAAAGTCATTTGCAGGCG 3342610 28 100.0 32 ............................ AGCACGTCACCCGTAAAAGTCATTTGCAGGCG 3342550 28 100.0 32 ............................ AAACCCAAAACTATTGTTTAGCGCCTCGCTAG 3342490 28 100.0 32 ............................ TGGAACGACAAGCCCAACGACAACCGCCGATT 3342430 28 100.0 32 ............................ TTGGCTATCTGTAAATGTAAGCCCTAACGTTT 3342370 28 100.0 32 ............................ ATTAACAGTAAACATAGGCGTACGAACAACGG 3342310 28 100.0 32 ............................ AGTCAAAGAATTTTTGAATTTCGATCAATAAT 3342250 28 100.0 32 ............................ GCAAGAAGGTCAGGTGTATGTGACTTCGCTTT 3342190 28 100.0 32 ............................ GAACCCGCGACGGAAATTAGGATTGTGACAAC 3342130 28 96.4 31 ....................T....... AAAAATGGCTTGGGAAAGTTGAATAGGTGTT 3342071 28 100.0 32 ............................ TCTTAAAATATGCGCTATCACTTCATCCGTCC 3342011 28 100.0 32 ............................ CGTCAAAGAATTTTTGAATTTCGACCAATAAT 3341951 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 91 28 99.9 32 GTTCGCCGCCGAGCACGCGGCTTAGAAA # Left flank : AAGATTAGAAAAGTTGATGGCGCTTTCTTGGTTAGGTGGTTTATCAGGCTATTGTGCATGTAGTGATATAAAAATCGTTCCTGAACATGCCTTACATAGGCGTGTTTCCCGTTGGCGTCCTAATATGAGTCAATCGCACCTTAGACGATTAATAAAGCGAGGTTCAATTTCAGAACATGAGATAAAGGCTTATAAAGCCAAAATGTTTGCTGAGCAGATGACTACCTTGCCTTATCTTGAAATGGAAAGCACTTCCAATAAAAATCATCATCGACGTTATATTCAAATGACAGATGTTCAAGATAGTTCACTGGTTGGTGATTTTGACTATTTTGGCTTGAGTAAAGCAGCAACAATTCCTTGGTTTTAACCAATGAAAAAAGCTCTTTAAAAATATCCTTTAAAAACAGTAAGTTATAACATGCAGAAAAAACATAGGTAAAAACGCTAATTTTTACCTAACTGCATGTTGTAACTTATTTTTTTGCGAATAAACTATT # Right flank : AGCACATTTTGTTCAAGTGCTAGTGTGGAATTAAGTGGAAGTAGCAAGGTCCGCTTCCCTCTATGTGTTGCTTAGGTTTAGAAGGTAAGTCATCATAAACGACATTTAACCCCTCTAGAATCATAATCAATTCGTGGTATTCTTGGTCGTGTGCTTACAGCACAAAACAAAGGAAACAAGCTGCTTCATGCAATAGAAAAGTTGAAAAAAGCTTGACCTATTATATGAGCACACTCTGTTAACACATCGTAACTGACCAACAACGGGGTTCAGTGGGCTAGTTAGTAGGTGTTAGAGTATGTGCAGGAGCCATTAAATAATAAGGACGTGAACGTATGAGAAAATACATAATTGAATCAGGCGACACTATTTCTGCTATTGCAAAAGCCAATGGTATTTCACAGAAAAAATTATTAGCGGCCAACCAATCCATCAGCGACGCCAATGCTATTAAAGTGGGGGATCAATTAACGATTCCAGAAAAGATTGAAGACCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGAGCACGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.60,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //