Array 1 4539667-4544623 **** Predicted by CRISPRDetect 2.4 *** >NC_010717.2 Xanthomonas oryzae pv. oryzae PXO99A, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4539667 31 100.0 34 ............................... CAACCTTGCGCCCCCTGCTGGTGCAACAATCCTG 4539732 31 100.0 34 ............................... TTGGCGGAATCGGTGGCGGTGCAGGCAGTGCTAC 4539797 31 100.0 34 ............................... CCACCAACGCTAGGGCAAGTCGCCCTGCTTGAGG 4539862 31 100.0 34 ............................... GCAGTTATGTTGCCCTCAGCCTGGGTCACTCTGG 4539927 31 100.0 33 ............................... TGCAAGAGGAGCTAGAGCAAGCAGGTGCACCAC 4539991 31 100.0 37 ............................... AACAAGATCACTGAGAGGAGTTCCGCGAAATGAGCGA 4540059 31 100.0 35 ............................... GCAGTCTGTATTGCCGCCTGTCTGTCAAGCTGCTC 4540125 31 100.0 34 ............................... TCATTGTCAAAGAACAGATCAACATCTCCTTGGT 4540190 31 100.0 36 ............................... TTCTAGACAATTTTCACGGGCACAGGAGCGCTCACC 4540257 31 100.0 33 ............................... TCTTGCTCTTGCCCATGTTCTGGTTGTTCTGGG 4540321 31 100.0 36 ............................... TTGTGCTTCCTTGATCTTCTCATAGCGATTGGTATT 4540388 31 100.0 36 ............................... ACATAGTTCCAAAATTCAGCCGATTCAGGCACAACA 4540455 31 100.0 37 ............................... ATCACATTGTTCAGATCAAGGCTACCTGGCTCTGGCC 4540523 31 100.0 34 ............................... TTCTTAATCCGGTAGTCGGAGGTGGAGAACGAGA 4540588 31 100.0 34 ............................... GCAAAGTAATGACTGATGGCCGAATTGAGAGCCT 4540653 31 100.0 35 ............................... CTGATCACAGGTGCAAACCGGTTTGGTTATGACAA 4540719 31 100.0 35 ............................... TACGGGAGAGCTAGTCCCAATGATGCTCATTGGAG 4540785 31 100.0 35 ............................... TGCCTGAGCCTTGTTTGGTTTTGTACCCAGTGGCT 4540851 31 100.0 35 ............................... AGAAAATAGTTTGAAAAGGGGCTTGACAGCCGTCA 4540917 31 100.0 34 ............................... GTCATCCTCATACAACTCAGCCTGCAAGTGCCTC 4540982 31 100.0 34 ............................... ACCACACTGCCTCATCAATACAAGATCCCCGTCG 4541047 31 100.0 34 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGC 4541112 31 100.0 35 ............................... AAACACACCAAGATTTTGTGCACCCTGGAACCAAC 4541178 31 100.0 35 ............................... ACCATGAACAACCAAGTATTCGCCAACGCCACCCA 4541244 31 100.0 33 ............................... CCATTTACAGACAGGCCTGGGGGCGAGGTTGCA 4541308 31 100.0 35 ............................... ATAATCAGAATAGCCCCGGCGTTATAAATGGTGTG 4541374 31 100.0 34 ............................... CCGATCTTAAACCCGCCAATATAGTTGTTGGCAT 4541439 31 100.0 33 ............................... GGGATCGATTTGCCGGGCCTGCTCTTGCTGCGC 4541503 31 100.0 34 ............................... GGCCTCTAGTATCTTCTGTCCCCGGGCGGTGCTG 4541568 31 100.0 34 ............................... TGCGCCGCGTGTTTAACAAAATTACTGAGAGGAG 4541633 31 100.0 36 ............................... ATACAACCGCCGATTTGCTACGCTGGCTCGGCGGTC 4541700 31 100.0 34 ............................... TACAAGTACGCGCCTGCGCGCGCAGCGGCGCCGG 4541765 31 100.0 35 ............................... TGTAGCGCGGCGTTCTCTGCGTCGGTCGCTGCTGC 4541831 31 100.0 35 ............................... CAGGCCTCTGCCGGGCGTTGGAATGACCGTTCGGC 4541897 31 100.0 34 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGT 4541962 31 100.0 35 ............................... TTGCACCAGCGCGTACACGCTGTATTCGCTACCCG 4542028 31 100.0 36 ............................... CGCTTCTCCGGATCAATAGGTCTGGCGGAGTAGAAA 4542095 31 100.0 35 ............................... AGGAAACGGTCGCCATTCGGCAGGCTGCGGCGCAG 4542161 31 100.0 34 ............................... AGGCCACGGATCAGGCGGTTATTCATGTACGAGG 4542226 31 100.0 35 ............................... TTCAGCGCTGCGGACTCCATCACCAAGATGTGGTC 4542292 31 100.0 34 ............................... ACAGTGGCTGTTAGCTCCAGGACTGTGCTTGCAG 4542357 31 100.0 36 ............................... CGCAATATCCGAGACGGTGTAGTTGTGGATAGACGA 4542424 31 100.0 36 ............................... ATGGAGGAGGCAGGCCTGCATGGGCTGCAATTGGAC 4542491 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 4542556 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 4542622 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 4542686 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 4542753 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 4542819 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 4542884 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 4542949 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 4543015 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4543081 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 4543146 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 4543212 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 4543277 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 4543342 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 4543407 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 4543474 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 4543540 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 4543607 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 4543673 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 4543741 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 4543806 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 4543871 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 4543936 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4544002 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4544067 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4544133 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4544199 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4544266 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4544331 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4544396 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4544463 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4544528 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 4544593 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 76 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //