Array 1 417695-418760 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIW01000012.1 Salmonella enterica subsp. enterica serovar Montevideo str. 609458-2 CFSAN000264_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 417695 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 417756 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 417817 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 417878 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 417939 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 418000 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 418061 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 418122 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 418183 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 418245 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 418306 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 418367 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 418428 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 418489 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 418550 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 418611 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 418672 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 418733 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 434896-436389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAIW01000012.1 Salmonella enterica subsp. enterica serovar Montevideo str. 609458-2 CFSAN000264_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 434896 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 434957 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 435018 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 435079 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 435140 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 435201 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 435262 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 435323 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 435384 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 435445 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 435506 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 435567 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 435628 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 435689 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 435750 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 435811 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 435872 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 435933 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 435994 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 436055 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 436116 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 436177 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 436238 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 436299 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 436360 29 93.1 0 A...........T................ | A [436386] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //