Array 1 114261-114956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKH01000002.1 Enterococcus canis strain DSM 17029 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 114261 36 100.0 30 .................................... AGTCATCTTAGCTACTTTGAGGTGACTAAT 114327 36 100.0 30 .................................... CACGATCAACTATGCTGGTAGTAGCTTTGC 114393 36 100.0 30 .................................... TACATACTTAAATCTAATTTGTACGCTAAT 114459 36 100.0 30 .................................... AAATCCACACGGAGTTACTGCTGAACAAGT 114525 36 100.0 30 .................................... TGCATTTTGCTTAATATCGAATATTGTACT 114591 36 100.0 30 .................................... GTAATGAAAACCGCTAACGGTATATAGTTT 114657 36 100.0 30 .................................... TTTAGATATTGCGATTGGTGAGGATATAAC 114723 36 100.0 30 .................................... TTGTTCCTCTGGCGTATTTAGGTACTGACC 114789 36 100.0 30 .................................... ATAAACTTATTCTGTATTGTAAACTATAAA 114855 36 100.0 30 .................................... TTTTTGCTATTTTTAGGTGAGTTTTTGTGC 114921 36 86.1 0 ..............................G.TTGT | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.7 30 GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Left flank : CAATGATAGACAAACTGACTGCTACAATCAGTGAACTTATTGGCTATGAACTATTAGAACATGAGTTAGATTTAGAGGAGGATGAAATTACTGTAAATGAGCTGTTTAAAGCATTAGGAATTAAAATTGAAACTACAAGCGATACTATTTTTGAGAAGCTTATTGAAATTGTGCAAGTTTATAAATATTTGTCTAAAAAGAGATTACTCATCTTTTGCAACGTGTATGCTTATTTGGCAGATGAAGAGCGATCCGAATTGCGGGAGTATATTGAACTAAGTAACGTCGATGTTCTCTTTATTGAACCTCGAAAAGTATCTGGAGCGATGCAAGTAATTTTGGACGAAGATTTTTTTCTAACCGAAAAAAACGTGTAACCGATAATTGTTCTTTGACAACTAAATAGTAATACCAACAATTAATGCAATTTGAGACATTTAAAACTAAAGTCTTGCTATGGATGAATAGCGCGATTACGGAACTTCGAAAAAGTCTACGAG # Right flank : TTGGCGTAGAGAAATAATCTTGAATAGTATATTTTTTGAGAGATAATTGCGCTGCAAAAAACCGTAATTTTAGGATTGCGGTTTTTTTATGGTTCTGCAAACCCTATCACATCAGCATGTCTAGTGATTTTGACATAGCTTTTCAGCTACAAAACGGCATACTTCTCCAATACTTTGCTACAATAAAGTTGTGGAAGATTCGAGAAGGAGAGGAGCAATATGAAATTAGGAGAACAGCTAAAACAGCTGCGTTTAGAAAAAGGCTATACGCAAGAAGAATTAGCAAATAAACTTTTTGTGACGCGTCAAACGATTTCCAATTGGGAAACCGAGAAAGGACAACCTGATATTGAGAATATTGTACTGCTAGCGCAAACTTTTGATATTTCAATCGATGAACTAATGACTGGAAAGCGACTAATCATTAGTGAGAAAAATGCTATTGGCAAGAAACATTTTATTGCCTTGATTATTTGGTCAATTGTATTGTTGGCGCTACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 607898-607528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKH01000001.1 Enterococcus canis strain DSM 17029 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 607897 33 100.0 34 ................................. ATACTTCCTCCACACTCCCATCAACTAACGTAGC 607830 33 100.0 35 ................................. TCGTAACCAGATGAAAAGTAGGCCAAAGAAAGGGT 607762 33 100.0 35 ................................. CCAAAAGTATTCTAGGTTGTCTAACTCAGCAATCG 607694 33 100.0 35 ................................. AATTTCAAGCTTGTTGATTTTCATTGCCATATGAT 607626 33 100.0 33 ................................. AAACGACTCAAGAAGGAAGTTATCAAATTCCAA 607560 33 87.9 0 ................A.A.........A...A | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.0 35 GTCGCTCCTCACTTGAGGGGCGTGGATTGAAAT # Left flank : CTACTTCCACCAAAAAAGAAG # Right flank : TTTTTCTGCCCAATCCCTTGATATACTTAATTTTATCATCGCTATTCATACCAAGAACTAAAATAGAAATCATGCGTACTAATTACAATTCTATGACGTAATATTCACTCGGGTTACCAAAATGATAAACACATCTTCTCTATCTATCGTTAAGCCTCCAGAAAAAGAACCTCTTGAGGTTCTTTTTTGGTATCCACTGATAAACTTCTCATTTTTAAATTTCTAGAAAAAATACTATTCGTCAAATAATTCGATATTGTTTTCACAAACTAACGTAACTGGCAACTGCAAATTTTAATAAAACCATATAATTTGGTGGATAAGGATTACTTATGTTTCTGTAAGATTGTGAAACTTACTCAATTTATATAAAAGCTCCTACCAATTACACTTTGTTAATGAGTGTACGATAATAAAAATGATAAAAATATGAATGTTATCCATTTGTATATAAATACAAATGGAAAGTTGAAAATATTATAAGGATATACAAACTAGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACTTGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 310953-312703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKH01000003.1 Enterococcus canis strain DSM 17029 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 310953 36 100.0 30 .................................... ATCGCAATTCGCAAGCTAACGGTTCGTGGG 311019 36 100.0 30 .................................... CAAAAAACGGTTTTTCATCATTAGTATCGG 311085 36 100.0 30 .................................... AGCTTGTAAACTATCTGACGTAGTGTAGTT 311151 36 100.0 29 .................................... ACAGACAAGCCCAAGCAAAATAGCAAGCC 311216 36 100.0 30 .................................... CCAGTTTACATTTTACCGCAACACACCATT 311282 36 100.0 30 .................................... CAGATGCTTACAATGCCGCAGTGAATGGGA 311348 36 100.0 30 .................................... TCCAGTCGCCATAGACTCTTGTAAGGTACG 311414 36 100.0 30 .................................... TTTAGTTGTGAAAATTGTTCAAGGTATTGG 311480 36 100.0 30 .................................... TATGATAGTTGATAGCACCTATCACCACGT 311546 36 100.0 30 .................................... TCAACGTCAGACGGATCTACAAGAGTATCC 311612 36 100.0 30 .................................... CGTTCATAGAGCGTGTCGTACACGTTCCCT 311678 36 100.0 30 .................................... TTAAAGATATTTCGCTCCGTAGTGTTAATT 311744 36 100.0 30 .................................... TCAAATTCCGTCTCAAATAAAAAACCATCC 311810 36 100.0 30 .................................... CTTAAAACAATTGCATCCTAAATTTGATTT 311876 36 100.0 30 .................................... CGTCCGCCACCATCTTATTTTTCTTGTACT 311942 36 100.0 30 .................................... ACGCCCAACATTTCAGACAGCTCAACAGCC 312008 36 100.0 30 .................................... AAACTTGTGTACCGATCAAAACAATTGGCG 312074 36 100.0 30 .................................... GGTGATAATTCCCGTCAATTTCTAGGTAAT 312140 36 100.0 30 .................................... TTTTTTCTAGTTGGCGAATAAGTTCCGCAG 312206 36 100.0 30 .................................... CGTAATAGGTCCCTACAGCTGTGACCACAG 312272 36 100.0 30 .................................... AAAAGTTACAACACGGTTACACAGGCAAAG 312338 36 100.0 30 .................................... TGCTGTTAGAGAAGTTACTCTAGGCAAGTA 312404 36 100.0 30 .................................... CCAAAATCATAGAACTGCATTACTTGACCT 312470 36 100.0 30 .................................... GCGCATAGACAGACGAATGTCAACAGTAGG 312536 36 100.0 30 .................................... TCTCGGTGGCTTCCATTGGTTCTTTGGTGT 312602 36 97.2 30 ...........................T........ AACAAGGTTATTTGCTCCCTCGTCTGAGCA 312668 36 77.8 0 ....................A.....TTAAA..C.G | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.1 30 GTTTTTGTACTCTCAAGAAATCAGTAACGGTAAAAC # Left flank : TTGGTTATGGATCAATAATCCTAACGCATTTATCTCGAAAAAAATTCTATCAAAATTTATTTGTAAGTTAAGAAAGGTTTCGGATGATACAAGTCTGCTCCATATCTTTATTATGAGTGATGATTATCTGGAGCTTTCTTATGAATATGAAGATATTTCAAACACGGTTCTTCTTTATGAACGTTATCAACAATTACCTGATTTCGAGAACTTTTGTGATTCATTAGCTCGTTATTATCCAGATGAATTATGTATGGATAATAGACAAATAATTCAATCTTTATACCGAATTTTTCCATATGTAGGTTATCAATCTGATATGCAAGAAGTGTATCTAAAAAATCAAGATATGGTATTATTAAAAGTAGTTAGTCAACTTTTGAATTGCGCTTCCACTGTGAAATGTACGGATTTAGAACGTGCATTATCAATTTTGGAACACAAATTTTTAGTAAACTAACGGAAAAACGAAAATTTCGGATTGGAGACGTCCATTTGAG # Right flank : GGCCTCCCAAAGACTACAAATTGTCGCGGGAGGCCTGTTTTCTATTTTCGTTCTGCCTTCTGTATTAGTGCAATCGGAATTGTTCCGAGTCCGGCTCCGAGAATAATTAAGCAGACATTTGCAAGAAAAAGAATCAGGGAACCGCTGAAAATAGCTGAGGATTGTGTGGCGATCCCAAAGCCAATGGTGGCTAAGGGCGGCATAAGTGAGGCGGCAATGGCGACGCCAGGTAAAATATTGCCGGAATCTTTTTTCGCAGAACCAATGATGGCTGCTAGTCCACCAAAGAAAGCTACGATGGCAATGCCGATAGATAAAGAGGTACGGTCAAGAATAGCTTGGTTCACGGTGGCGTCTGGCGCAAGCAAAAAGTAGATTGTAGAGGCAATAATTGCCACGACGATTTGTAAAAATAATAATAGACAACCTTTGAGAAAAAGTTTTTTGTTGCGAAGCACACCACCATAACCGATGCCTAAAAGAGGATCCATCAAAGGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGAAATCAGTAACGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 384995-384691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKH01000003.1 Enterococcus canis strain DSM 17029 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 384994 34 100.0 33 .................................. TTTTTCAATATTTTCAGTTTCGACTCAGTAGAC 384927 34 100.0 34 .................................. GAAAGCTACTATGGAATATCGTCAGGAAATGGAT 384859 34 97.1 34 .................................T GTAGGCGGCACTCACATAATGAAATACTACAGAA 384791 34 100.0 33 .................................. ACATCTCCAACGCGCCACCACTCAATGATTCTA 384724 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================== ================== 5 34 99.4 34 GTCGCTCCTCTTATGGGGAGCGTGGATTGAAATA # Left flank : TATGGGGAGCGTGGATTGAAATGTTTTTAAAAGGAGATTGGAAATTACCATGGGA # Right flank : AACAATAACTCTAGAATCATTCAACCACCTGCCCATCGCTCCTCATATGAGAACGATAGAAGTTCTTCATCGCAGGAATACCTATCGAGCTTAGATTTCCTCGTTGTACACTCGTGCTCTTTAGAAAGATAGCAAAAATACTCTTCAGTTATAAGAAAATCTACATACTCAAAATATTCTTTTAGACCTTTCCAGTAAAATCACGAAAAGACTTCTTCTTACCATACTCATTAGTGCTAGTATTGGTGCTACTTTCATTTTGACGAATTAGAAAAAGCTAGGAATACCTATGTATCAGCATTCCTAGCTTATTTTTCTCTATTACCCCACAGACCCTTCCATTTCATAACTAATCAAACGATTTAGTTCAACGGCGTATTCCATAGGTAATTCTTTGGTAAATGGTTCCACAAAGCCCATGACGATCATTTCAGTTGCTTCTGATTCGGTCAGGCCGCGGCTCATTAGGTAGTAAAGTTGTTCTTCAGAGATCTTGGAGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCTTATGGGGAGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 1 1372-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKH01000015.1 Enterococcus canis strain DSM 17029 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1371 33 100.0 35 ................................. CGCCCACGCCCGTATCATAAGCGGCGGGTGGATAA 1303 33 100.0 34 ................................. CTTTTTAACGATGCAGATGTATCGTTGGGAGATT 1236 33 100.0 35 ................................. CATTTCAACTCGCTCTTGGTAAGCATCCTCGGCGG 1168 33 100.0 34 ................................. GCTACTAAACGAGGTGGGTCAAGGCAAGTCAAAA 1101 33 100.0 34 ................................. CCTATGCCCTTGGTGTTTACAATAAAAAAATTAG 1034 33 100.0 34 ................................. TACTTCGTTTGAATCATCTAAGTTATTAGCGAGT 967 33 100.0 35 ................................. TAAAAGGAGGTTTGATAGATGGTTAAAGTGTTTAA 899 33 100.0 35 ................................. AACACGTCAACGGTCTAAAACAAGTTTTAGCTGAC 831 33 100.0 34 ................................. CCTATGCCCTTGGTGTTTACAATAAAAAAATTAA 764 33 100.0 35 ................................. GCCCATAATTGACCAATACCCCGCTGTATAATCAC 696 33 100.0 33 ................................. CATCTTTCTACGATTTTTTTGAGGTCATTTTTG 630 33 100.0 34 ................................. CTGACGGCACGTTGCATAATGAGGTTAACGGTAT 563 33 100.0 35 ................................. ATTTCAAAGAATTGAAATACGACGGAGAGAAAGAA 495 33 100.0 34 ................................. CGAATACGAAAGGTTATAAGCCTGTACGCCTTGG 428 33 100.0 35 ................................. TTGCCCTTGCGTATCAGCTCCGATTGAAGTATCTC 360 33 100.0 34 ................................. TTCATTGTCGTCGTCCTCCTTTTTAACTTCTGTT 293 33 100.0 35 ................................. AAAAATACCGTTGCCAATTTCTGACTTGTGCCAAT 225 33 100.0 35 ................................. TCATCCTTCGTGGTGGTGCGCTCAAAAAAAGTAAT 157 33 100.0 34 ................................. ATCCGTATTGTACTTATAGCGTATTTGCTTTTGA 90 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 20 33 100.0 34 GTCGCTCCTCACTTGAGGGGCGTGGATTGAAAT # Left flank : GATGAATACCCTCCTTTTTTATGGAAGTAGGTGGTTTTTTTTGATGATACTAGTAACTTATGACGTTTCAACAGTGGAAAAAGAAGGAAAGCGGAGACTGAGAAAGGTTGCGAAGATTTGTCAAAATTATGGAATTCGTGTTCAAAATTCGGTGTTCGAATGCGTCGTTAACCAGACGGAATATACGCAAATGAAAATCAAGCTTTTAGCTGTCGTGGATGATCAAGAAGACTCATTAAGAATCTATCGTCTAGGAAAACAGTACAAGAGTAAAGTGGAACATTTTGGAGCGAAAGAGTCTATAAATGTAGAAGAAACGTTAATTTTTTAAAAAAGAAAAGTGGTGCGAATCAAAGGTACACATAAAATTTCTAAGAGATTCGCACCATTAGTTTATGTGTTAGTTAGAGTATTATTAGAAAATACGGATGCTGAAACATCGAAAACAAATATAATATGAAATAAGAAACAAAAATATAGATGAAATTCTTTATTTTTGT # Right flank : TTCTTTTAGCATTCATAAGAAGCCACCTTTCGATATCGTCGCTCCTCACTTGAGGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACTTGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.20,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 9896-10878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKH01000015.1 Enterococcus canis strain DSM 17029 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 9896 33 100.0 34 ................................. GACCCAATAGGGTTTATAATAAGAATGTAGATAA 9963 33 100.0 36 ................................. ACACATGTAGTAGGCAATGGGCAAGTGATCCAAACG 10032 33 100.0 34 ................................. TTTCAACGAACGAACAGCTCAAACAATTACAGCT 10099 33 100.0 35 ................................. ATTAGTTATACCACTTAATGAAAACATATCTGTTT 10167 33 100.0 36 ................................. ATCAACTTGAAGAGTATCGCCTTGAATATCCTAATT 10236 33 100.0 37 ................................. CGCTTTGAAAGATATTCTTATCTTAACAAGTGACAGT 10306 33 100.0 34 ................................. AGGGTATATTGGTTGGGGGCTTGCAAAATTACTT 10373 33 100.0 35 ................................. AACACGTCAACGGTCTAAAACAAGTTTTAGCTGAC 10441 33 100.0 34 ................................. CTGAAAAGGCAAAAATCTTAGATATTAGCAACGT 10508 33 100.0 35 ................................. GCAATATTGCTGACACGGTTCGTCAGTAGCTTATC 10576 33 100.0 35 ................................. TTGAGTGGTTCGGGTTTTGGTGCAGGCACTGGGGT 10644 33 100.0 35 ................................. ATTTCACGCCTCTTTTCGTAGTAAATCCAAATGGC 10712 33 100.0 34 ................................. AACGGCTGAGTAGCTCCCCTCGATGTTGCCGTCG 10779 33 100.0 34 ................................. TTGTAACATACAAGTTTAGTGGGCTGATTAAATC 10846 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 15 33 100.0 35 GTCGCTCCTCTTATGGGGAGCGTGGATTGAAAT # Left flank : ATGAGCCATTATCTTTTGAAATGTTGGCCGTTTCTTTTAAATGTTGTACCAGTGGCTGTTTTGCACCATCACTTGTCCTAAAATGTGCTATATACAATTTATTCACCTCACTGTAATTTTATAAAGCTCTCAAAGAAACCGTTTTCTTTAAGTCTAATATAAAATTCACCCCTTCACAAGTACGGTAAGATTCTTACTTATAGTTATATAACCCATCTGCATCATAACCACTGACTAAATTTCCGTTTAGAATTATGTAAATAGATTTAATCGATTCCATAATGCTATAATTGATATGTAAGGGATACCAATTATCATACTTTGAGTCTTTACTAAGCTGCTAGTGCGAACCTGAGGTACACATATTATCCCTAGTGATTCGCACCATAAATTTAGAGTTTATTAGAACTATATGTTAAATACGTGCTACTAATCAAAAATTCTTATTATTTTAGTAAAGAAAAACTAAACAAAATAAGGAAATTATGCCTTATTTTGCA # Right flank : TTGAGTGGTTCGGGTTTTGGTGCAGGCACTGGGGTGTCGCTCCTCTTATGGGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCTTATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA //