Array 1 146744-149700 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDG01000005.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIB .SLX_12186.D704_D506.HJ72NBBXX.s_1.r.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146744 29 100.0 32 ............................. GCGGTGCTTCGCTGGTGGACGAGGCGCTAAAC 146805 29 100.0 32 ............................. AGGCTCAGGAGCGAGAGCAGTTAGCGAGCAGG 146866 29 100.0 32 ............................. CATACTGCGGAACACAGTTCCACCCATATTGG 146927 29 100.0 32 ............................. TTAAAAACACAAGTCTCATTATGGGAAAAAAT 146988 29 96.6 32 ............................C AATCGCGTTACGCTCAATGCAGGGAACCTGGA 147049 29 100.0 32 ............................. TAACTACTGAATTTCAAAACGCGGCTACTCTT 147110 29 100.0 32 ............................. GGTTGTCTGGTAATGCTGCATATTCACGCCTC 147171 29 100.0 32 ............................. AGCCGTTTATATTAATAATGTAACATGTAGAA 147232 29 100.0 32 ............................. GCTACGGTAATGCCATAAACGCACAGGCTGCT 147293 29 100.0 32 ............................. CAATACGACTGGACGGGATTTGATTCATTAAC 147354 29 100.0 32 ............................. GCCCACAAGGAAGGCGCTTACTTTGTTGCTAA 147415 29 100.0 32 ............................. AGATCTCTACGTCGGAGAATTCTGGCGAATCC 147476 29 100.0 32 ............................. GGCTATCGCAGCGTTCGTGACCTGATAGCGTC 147537 29 100.0 32 ............................. CCTTTAAGGGAGAATGCCCAATTTGCAAGCGT 147598 29 100.0 32 ............................. ATTTTAGCAGTTCCTCCGCAATATACATTGCC 147659 29 100.0 32 ............................. GCGTCAGCGTGGCGCGCGTTGAGGTATTGCGG 147720 29 100.0 32 ............................. TTGAACCGTCAACTGGAATTAATAATTTAATT 147781 29 100.0 32 ............................. CCGTTAATTTTGCTGATGGAAATGATAATGCA 147842 29 96.6 32 ............................T GGTCGGAGGCACGAGTGGAATAGGCGCGATAC 147903 29 100.0 32 ............................. ATGCGGCGGTAGTGTCATTTGTGCCAGTCTGA 147964 29 100.0 32 ............................. GGGTCTGGTCAGGGAACTACTGATACATATTC 148025 29 100.0 33 ............................. CCGGAAAACTTCCTGTCGAGCCGCACCTCATGC 148087 29 100.0 32 ............................. CTGCCGTCATTTAAAATAACCTGAATTGTATA 148148 29 100.0 32 ............................. AATTTTCCCTTTGCGTTAATACTCCATCGGAA 148209 29 96.6 32 ............................T AATTATTGACCCAGACGGAGGATGGAGTAGAG 148270 29 100.0 32 ............................. CGAAAGTAGAACGGGCGGGAGAATATTTAATA 148331 29 100.0 32 ............................. TTAAAACGTTTAAATCCATTAGAAAATAAATC 148392 29 100.0 32 ............................. AGATGGCACAGAATCAGGTTTTTCAAGCGCCG 148453 29 100.0 32 ............................. CTGATCCAACTTACCAAATTAGTGCTGGTAAT 148514 29 100.0 32 ............................. GGTATCAACAAACTGTTATTTCATTCATTACG 148575 29 100.0 32 ............................. GATTATTATCTGGTGTTGATATAAACGATAAT 148636 29 100.0 32 ............................. TTAATATTAATGATTATCCTTCCGGAGTAACA 148697 29 100.0 32 ............................. ACCGCCAACTAAGCCAGCGCCAAACCCACCAG 148758 29 100.0 32 ............................. GACTTTGTAACCGATCCACATAATACACATAG 148819 29 100.0 32 ............................. GCGTCTCCATGCCGTTGATAAACATCCCGCCC 148880 29 100.0 32 ............................. ATCAGTTTCCCGACAGTATTGCCGTTCTGCTG 148941 29 100.0 32 ............................. AAAAAATGGAGCGCCTGCAGTCGACGTTTACC 149002 29 100.0 32 ............................. ATCCTGAATATGGAACATGTCGGATAACGTTT 149063 29 100.0 32 ............................. GCGCCAACCATCAGGGTTTAACCAGGCGATGA 149124 29 100.0 32 ............................. GCTTCGCTAAATGACACGGCTAACTCAGTAGC 149185 29 96.6 32 ............................C TCACAAAACCGCTGCGCCAGCTTAATGCGGTC 149246 29 100.0 32 ............................. TCCGAAACCGCCGTCGCACTGGCTGACGGTGT 149307 29 100.0 32 ............................. CAGTGTTTCCCGATGCCTGAAACTTTCCATGA 149368 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTTGGTGAATGGGA 149429 29 100.0 32 ............................. CGTTTTCTCCGGAGAACCGCTACAAATACTAA 149490 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 149551 29 100.0 32 ............................. AGAACCATCTTTCTGCGATTTATACTCAACGA 149612 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 149673 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158141-159329 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDG01000005.1 Salmonella enterica subsp. enterica serovar Legon strain NRWCIIIB .SLX_12186.D704_D506.HJ72NBBXX.s_1.r.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158141 29 100.0 32 ............................. CGATTCGCGCTGGATCATCTCGTTCGCGCCGC 158202 29 100.0 32 ............................. CGCCCAGATACTGGCAGACCAAATTGCAGCAC 158263 29 100.0 32 ............................. ACGACGTCACTAACCGAATTTATAACCTTGGT 158324 29 100.0 32 ............................. GACGCATGGGAGCACGGTAAACCACTGGCGCA 158385 29 100.0 32 ............................. CAGCCGCCTGGCAGAATAAACACCGCGGAACA 158446 29 100.0 32 ............................. TCAACGAGACACGCAGCGCGCTGGACGGTTTC 158507 29 100.0 32 ............................. GGGATTTTGATTCCTGACGATGTTTTGTGCCG 158568 29 100.0 32 ............................. CTGAGCGTAATAGGGAGGAATATGCGCAAAGC 158629 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 158690 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 158751 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 158812 29 100.0 32 ............................. ACATAAACGGACGCGCGGGGATCCGAATTTTT 158873 29 100.0 32 ............................. TTCGCCGTCGTGAAAGCGGGTGAGCATTCCAG 158934 29 100.0 32 ............................. CTGGCCCCGCCCCGTGGTGTTTTTCGAAATTT 158995 29 96.6 32 .............T............... GCTGATAGCCAACCTGTAAGTGATCGTGATGA 159056 29 100.0 32 ............................. GTGCGAAAAATGGCAAAAGGATCGAACAAAAA 159117 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 159178 29 100.0 32 ............................. GAACAGATCACGCTCGGCGACGCGGCGGTTAT 159239 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 159300 29 96.6 0 A............................ | A [159326] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGTAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGGGCCAGAATATGCAATATTGGTGGCTGGCGTTCATCCGGAAGCGTAGATTTTCGTTGCCCATGGGCATCGCGGATATGGCGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //