Array 1 1602703-1602465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021387.1 Bifidobacterium breve strain NRBB09 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1602702 33 100.0 36 ................................. TGGCTGGACACGTCGATCGTGTCGTACAGCCAGAAA 1602633 33 97.0 34 ...........................C..... TACGTGGGCTGCATGCTCGCCATGCCCACGAGCC 1602566 33 97.0 36 ........T........................ AAAATCGAACTCGACAAACAGGGCAAAGCCGCCGTG 1602497 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 94.7 36 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GATCGGCACGAGCCCGAACGCGGACCTGGCCAACGGCATGCTCGCCGACGCCTGCTCAACGCTCAAGGACGGCGAGAAGCCGATCATCCATTCCGACCGCGGCTGCCACTACCGGTGGCCGGAATGGATCCGCATCTGCAAGGACAACAACCTGACGCGTTCGATGAGCGCGAAAGGCTGTTCTCCCGACAACGCGGCCGCGGAGGGGTTCTTCGGCCGTCTCAAGCAGGAGTTCTTCCATAAACGGAGCTTCGCAGGTGTCACCATGGACGAGTTCATCGGCATGCTGGACGAGTACATGGTCTGGTACCGGGACAGGAGGATCAAAACGGAGTTCGGCATGAGCATCATGGACCGTCGACGCGAGCTCGGTCTTGTGGCATGATTGGTGGTGATGGAATCAATGACGAGTCCAACAAAACAGCACCACCCCCTACTGTGGACGCCAATTTGCAGAAACACAATGTGCGAGAAAGCATCGACCACTACCTCAAGGGGAA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 6.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1617136-1614602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021387.1 Bifidobacterium breve strain NRBB09 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1617135 33 100.0 34 ................................. AACACCGCGAGAATCAACGCGCGGAGCTTGGTGT 1617068 33 100.0 36 ................................. ATTCTCTTATTCGTTCCATGGTTGTTCCTTTCTATT 1616999 33 100.0 34 ................................. ATTGGTGGTTAATCATGGTCGAACAGTCCGTCTG 1616932 33 100.0 34 ................................. AGCGACTGGGTGAGCGCGAACGCCGAACCCATCA 1616865 33 100.0 33 ................................. AGCATCCAGTGGGGCACCGACGGCATCGACCAG 1616799 33 100.0 34 ................................. AGGTCAACGGCATCCACGACTCGTGATTGCGTCA 1616732 33 100.0 36 ................................. CGGCGGTTCCGGTAATGCCGTTGGATGAAGGTACCC 1616663 33 100.0 36 ................................. CTTGGCGACGTCGCTCATGCCCAAGTCCATGATGGC 1616594 33 100.0 33 ................................. TTTTTTCTCGGTGCCGCTGGACTGGATGCCAAG 1616528 33 100.0 37 ................................. TACTTTAAGAGGTGATTATGGACGATACCGAAAACGA 1616458 33 100.0 33 ................................. CTTTGACGATCACCGTCGCACGCCCCTGCAATG 1616392 33 100.0 35 ................................. TGGTTGGCGACGATCAGGTAGTCGACGTCCGGATG 1616324 33 100.0 33 ................................. GAGTTGACGACCTGGTAGATGTCGGCCCCGTCG 1616258 33 100.0 36 ................................. AGGATCACCGAAGGGCATGCGCGCGATGACGCGGAC 1616189 33 100.0 35 ................................. TCCTGGCATCGGAACCAGCAGGGACTGTTCGACGC 1616121 33 100.0 35 ................................. GGTGCTGTTCCTCGGCGGCAACGAGCAGTCCACCA 1616053 33 100.0 34 ................................. CTTTCGTTGTTGTTGTTGGCCTTGCCGTCAAGTA 1615986 33 100.0 33 ................................. CTCTTGAGATTGCGGACATGCTGATTCGTTCCG 1615920 33 100.0 36 ................................. ACCGACTGCGACGACCCAAATGAACTCCTCGCGCTC 1615851 33 100.0 34 ................................. TTCACAAAGAGGGGAGTATTGATGGGATTCCTTG 1615784 33 100.0 35 ................................. ATCGTATTTGTGTAAGAATTGTCCGAATTTCGACG 1615716 33 100.0 34 ................................. CTTTCAGGCTTTGGCGAGATACCAGGCGGACTTG 1615649 33 100.0 35 ................................. ATCCACCGCCAGCCCAAGGACCAGCAGGCCGGATT 1615581 33 100.0 33 ................................. CATGACCCATGCGGGATGCTGGCCGTGCTCGTG 1615515 33 97.0 33 ..T.............................. ATCAATTCGTCAAAATATCTGTCGTTGAATTTG 1615449 33 100.0 34 ................................. TGTATTCAGATGTGACATCCTTGATACTTGCATT 1615382 33 100.0 36 ................................. TAGCTGGTTTCGGGGGTGTGGGCGGCGCGTGCGCCC 1615313 33 100.0 36 ................................. ACCAAGAAAACCTGGGCAGACGGAGCCAACGGCGGC 1615244 33 100.0 34 ................................. TTCCAATGGGATGAAATGTTGGAGACCACGAATT 1615177 33 100.0 33 ................................. AAGTATTCGGACGAGTTTGAAAATCCGATTGCA 1615111 33 100.0 36 ................................. ATGATGTTCGTCTCCTTTTCGTCAGCTCCATGCGTC 1615042 33 100.0 34 ................................. CGCGACCGCAAGGACGCCGCGCAGGCCGTGAAGT 1614975 33 100.0 35 ................................. TCGTCCTGCATGAGCGACACCACATCGAAACTCGC 1614907 33 100.0 34 ................................. ATCGACGAGAACGGGAAATTGGACAATGTGTCGG 1614840 33 100.0 37 ................................. ACTTCCGAAGTGCTTTCGGGTCTGACGCCGATTGAGA 1614770 33 97.0 34 ....................T............ ATGAAGGAGATCGACAATGACTGACCACACCGAC 1614703 33 100.0 36 ................................. ACCAAGAAAACCTGGGCAGACGGAGCCAACGGCGGC 1614634 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 99.8 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGCTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TCCGACATCGCCACCACGATAGCGCCCGGTGTATTTCGATGCTCCTATACATTGTCAAGCGTTTGGGTGTGTTGTTTTGGGTCGGTGATGGAGTGGATCCATTGGATGGCCCGTTGCTCGAGTTCGGGAAGGTCGCGTGCGCCGCGTTCGATCTCGCTGATGCGGCTCGAGGGCACGCAGAGCGCCTCGCCGATCTGTTGCTGGGTGATGTTCCGGCTGACGCGTAGTTCGCGCAGCTTGGCGCCGCGTTCGGCCGGGGTCCCGCGTCCGACCTCGCCGTTGCGTATGCTGATGAGCGCCCGGTATGCCTCGCGGGCGATGAACCGTTTGACGCAGCGGATGATCTCGAGCTTGCCTTTGCCCTCGCGGGTCTTTTTGGCCATGTAGTCGCGGGTCGGCTTGTGGTATCGCAGGCGGACGATGGCGATGCGGTGCAATGCCATGTTGCCCTGCCGGTTGCCGCCTTTGTTGAGCCTGTGTCGGTTGGTCCTGCCGCTGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //