Array 1 4484704-4481737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055159.1 Shewanella algae strain 2NE11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4484703 28 100.0 32 ............................ TTAGGAGGCCTTATGTCTTTTTATCAACTTTT 4484643 28 100.0 32 ............................ AATTAGTTACTACGGTGCGGAATATGCTGTAG 4484583 28 100.0 32 ............................ GCATTAGTTAGGCAATATCGTGATGCCCGTAT 4484523 28 100.0 32 ............................ AAGTCAAGTAACTGTTGTATGTTCATCCCGGC 4484463 28 100.0 32 ............................ AAAGAAGACCCAAGCGAAAAATGTGATGAACA 4484403 28 100.0 32 ............................ TTCCCACTCAGGACCAGGGCGGACGCCCTTCA 4484343 28 100.0 32 ............................ GATTTCACCGATGAAGAAGGTCGCGCTGGTTG 4484283 28 100.0 32 ............................ TTATTGCTTATCTGACTGCTTTGAAAATCATA 4484223 28 100.0 32 ............................ GTAAGTGTCGCGCTCCGGGTTGTGTTCAATCA 4484163 28 100.0 32 ............................ TATGAAAAGGAACTGGCCAACCTTGGCGAGGA 4484103 28 100.0 32 ............................ TTAACCGTGCCAATGATAGGGCATACATGGCA 4484043 28 100.0 32 ............................ TCATCGACAACGAACAGCGGCCCCTGGCCTTT 4483983 28 100.0 32 ............................ TTCCACTCTTAGAGCTGTCTTGGTTGATATAC 4483923 28 100.0 32 ............................ TGACAACTTGGCATCAATGCACGTTAGTGCTA 4483863 28 100.0 32 ............................ TGCCCCTGACTTGGTGCAATTCTCTGGTATCT 4483803 28 100.0 32 ............................ GCCATTTCTGGCATGGTCTCCCACCAAACAAA 4483743 28 100.0 32 ............................ TATCGCGCCTGTTTTATCCTAGACCGTGTTAA 4483683 28 100.0 32 ............................ GATGAGCTTAATCGGCTGCTCTGGCACAACTC 4483623 28 100.0 32 ............................ TCTACGTCCATGACGTGGGAACGCCAGACCCC 4483563 28 100.0 32 ............................ AGCCTGGCCAGTGAAATCCTGTTGTTCGTTTA 4483503 28 100.0 32 ............................ CAAACCCTGAATACTTTTGCCGGGGCTTTACC 4483443 28 100.0 32 ............................ GTTTCCCCACTCGATTAGCTGCGCCTGCCCTG 4483383 28 100.0 31 ............................ GCTAAATATCGAAGCCGGTCAGCCGTGGAAC 4483324 28 100.0 32 ............................ TGATCCTGGCTTCGAAGGGGTTTTGAAGGGGC 4483264 28 100.0 32 ............................ TCTTGGATTGGTGCAGGAAGACTGTCGATAGA 4483204 28 100.0 32 ............................ TCATGTCAGAGAAGCTATCGATTGGCATATCA 4483144 28 100.0 32 ............................ GTAACGGTATACGGGATGCGGTTATGCGGATC 4483084 28 100.0 32 ............................ ACAACCAACGACAACAACAGCGCTCCCAATCT 4483024 28 100.0 32 ............................ CCAAGTAAAAAAAAGTGGCGGCCTTTAGTTTT 4482964 28 100.0 32 ............................ ATTAGATAACCCCTTCTACAAACTGCTGAAAC 4482904 28 100.0 32 ............................ ATCCACACCTCAAACCACAGACATCTACGTCA 4482844 28 100.0 32 ............................ TTGATAAAAAGAGGGCATTTTTTTGCCTTTCT 4482784 28 100.0 32 ............................ GTTGTGCCGATATACCCTAATATTTCGTCCCC 4482724 28 100.0 32 ............................ TTTGTAACTGTAGAAGTGGCGGTGATTGCTGG 4482664 28 100.0 32 ............................ GCCGGAATTATACAGACCGGGGCGGATTGACG 4482604 28 100.0 32 ............................ CATCTAAAGGAGGCAGCATGAAAAACAAACTG 4482544 28 100.0 32 ............................ TATTTAAGAAAGCGATCTGGGACTGAAAAACA 4482484 28 100.0 32 ............................ ATTGACATAAACCGCATCGACAGTGACAGTGA 4482424 28 100.0 32 ............................ GACCCGGACTTTGTTCGCATCGACGGCGTGCC 4482364 28 96.4 32 ..........A................. ATCTTGCACCAGAAACTCGGCCTGCATAATTT 4482304 28 100.0 32 ............................ CGAACTTTACCCCGGTTTCCCGGGGTTACTCC 4482244 28 100.0 32 ............................ CACGCACCGCCCAGTAATGGCACCAGCATGTG 4482184 28 100.0 32 ............................ ATTCGTGACATGACGAACTTACGGTCAGATAC 4482124 28 100.0 32 ............................ TTATTAAGGATGGCTCTGATTATGAGCTTGGG 4482064 28 100.0 32 ............................ CCAACATCCCAGTCTCCGGTCAATGTTGAATC 4482004 28 100.0 32 ............................ CTGCTTATCACTTCGAGCCGCTGGCTGCTGAA 4481944 28 96.4 32 ..........A................. CTACTTTGGTGAAACGATAGCGATCCATAGCT 4481884 28 96.4 32 ..........A................. TGGCGCAGATAACGTGGGTCCACCCATTTGTA 4481824 28 100.0 32 ............................ GGACAGCTGCCGATGAACAGCAAATGCCGTTC 4481764 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 50 28 99.8 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTAGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCACCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTAGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : GTTCTTCTGGTGATGACCTTTCCCCCGAATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGTCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCCACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCAGCGTAGCTAACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //