Array 1 277434-277800 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYND01000140.1 Paenibacillus polymyxa strain CFSAN034343 NODE_3_length_551573_cov_45.2895_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 277434 32 100.0 34 ................................ GGACAGACGCTCCTGCATCGGCGTGGGTTGTTGG 277500 32 100.0 35 ................................ CTAAATTTGTCTAATGGATTATTCATAGGGTTGAA 277567 32 100.0 35 ................................ ATCTGACTGAATGACAGTATCTTATCCATCAAACT 277634 32 100.0 35 ................................ AACCACCCGAGGATCGGGCCGAAGATGCTATCAAC 277701 32 100.0 36 ................................ TTCACGACATAACCCTCACTTTACGAATTTTTTATA 277769 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.5 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGTTCCGTATTCGTGTGAATGTCATCTATCCGGGTGCCATTTCGACGAATATTGATGAAACCACGGAGAAATCGGAAGGGTTAAAGCAAATTACCATCCCCGTCAAGTTTCCCGAAGGAGGGCAACCGTTGGCTGATGGGCCGGGTCAACCCGAGCAGGTAGCTGATTTGGTGACATTTTTGGCTTCTGATCATTCGCGTCACATTACTGGTGCACAAATTGTAATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATAGAGCATGCTCTGGGACGGAGAAATGTTTTGTGGTATCCTGAGTGTATTGTCTTGGTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAATGGATTCGGATTAGCTTTCTTCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTTGGCATCGTTTTTTTCGAAAATGCATGGAATTGATATCATTAGGGTATGAATTCCTTCATTTTCGCT # Right flank : TACATAGGGAGTAGGGGGAAGATGCTGTTAAGCCTCTCATCGCACTCTATATAAGCGTAGGATTGAGGGGTGAGCGAGGGACAGGAATGTAGGGGCATATTCTGCTTAGAATCAGTAAATGAAATTAGGCCGAATATATTTCAGTTTTACATCAGATCATATATCCTACATATATCGAGAATCTTCAGAGATAAACTTCTGGGGATTTTTTTGTTTCTGTGTAATTTAGTTCATATAATAAAAATTTATGATATTTTATTTATTTGAAATTAATTTGTTAATAAATACAAAACAAACATGATATAAATGGGTCTTAGCTAAGAAAGCGCATTTATAGTATTCATCGACAGAGAGGTAGAGATATTCGGTTGGTGAAGGGAAGTTGCGCGTATTATGGTGGTGAGAATGGCACCCAGCATTTTATTGGATTATTTGCTTAAGAAGTTCAAGGTATAATTCTAAAAAGCGGTAACTGACTTGTATGTGTCTCCTATACAGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 287381-287892 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYND01000140.1 Paenibacillus polymyxa strain CFSAN034343 NODE_3_length_551573_cov_45.2895_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 287381 33 100.0 37 ................................. AAAAATATGCAAAAGACAGGCTATTTGTGGGATTCAA 287451 33 100.0 34 ................................. ATCTCAAGCGTGATGCGCTCGATGATGTTGTACG 287518 33 100.0 35 ................................. TATAAACACGGCAAGAAGGGAAGTAAAGCTGTCTC 287586 33 100.0 34 ................................. AGTTTCTGAAGGGAAATTTGTCGGAAATATCCCT 287653 33 100.0 37 ................................. TGGCGGGACGTGGACGCATTTACGAACATTACTCAAA 287723 33 100.0 37 ................................. AGACAAATGGACCGGACGACCAGTGATATGGCCGCTA 287793 33 100.0 34 ................................. TGGCAATGTAGTCAACTTTAAATAATAAACCAAA 287860 33 97.0 0 ......................C.......... | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 99.6 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATCACGTATGATGTAAGCACAGTAGACAGAGAAGGTAGAAAAAGACTGGCAAAGGTTGCGAAAAAGTGCGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATTTTGGACTCGACCCAGTTCCGCAGCTTAAAGTATGAACTCGAAGAATTAATAGACCCAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTACAAGAAGAAAGTAGAGCATATAGGGGCAAAGGAAGCTTACGATATGGAAAGCCCACTAATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCAGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCATTAGAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGACATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTCCTGCATTTTCGCT # Right flank : TTTGCTAGGACTTGAAGAATTAACAGTAGAAGCTAAAGTCGCACTCTATATGGGTGCGTGTTGGAGACGTAGTATATTTCATAAGGAGGTTTTGTATTGGCTCCGGCGCATTATCGCTACTTTTTGGAGTAAGGAAGAAGACAATGACGCTTTTGAGGCAGGTGTTCAATCTCTTCTAATGAAAATCTCAGAACAATACAAACTAACGTATGGCGAAAAAACACAGCTGCTTGCTTCAATGATACTAGAGTATTCGAAATACGTAATAAGATGCGAACGTCACAGTACAATGGATGAAGAAGGAATGTGGGAGTAATTGAGACAAATGCGGCACTGGAGTTGAACGAACTGGACTTGATAGAGGAGAGGAGGAGAGAATGAAAACTTCTGTATGGCTACATAATTATACTCAATTCACAGCCCTAGGACCTATTAGCACCGAAAACAGTACCATTTTGCGTGGCTCTAAGGGGGGAAGAGCAGCCACCTTAGAGCCAGTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 292707-293339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYND01000140.1 Paenibacillus polymyxa strain CFSAN034343 NODE_3_length_551573_cov_45.2895_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 292707 32 100.0 37 ................................ CACTTGGCACGCTCTGCGTCTGTTACCCCGCTCTGCC 292776 32 100.0 34 ................................ AATTTTCGTAATTTTGTATTGTGCATAATTTAAT 292842 32 100.0 35 ................................ CAAAATGGAATGTCTGATAGGGGCGGTAGGGTTGA 292909 32 100.0 35 ................................ TGTTATTAGTTGCTTAGTATTATCAGGATAAACAA 292976 32 100.0 35 ................................ AGCTTTCCGGTGAGCTGTCCATGTGTTAGGCCGAC 293043 32 100.0 34 ................................ ATTATTTTGTAATTCAGAAGGCTTCCAAAATTTA 293109 32 100.0 33 ................................ CATCCGGAGAGCACCACGGCATGACGACCGCAT 293174 32 100.0 36 ................................ TGTAACCACCAATGCCGCACCAAACATATCCATCAC 293242 32 100.0 34 ................................ TCACTGTTTTGATAGCGCAGCTCATTGTATTTGA 293308 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 100.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GTCCTGTTTTTGATTAACAAGAAAATGATTAGATAAAGGATTTTACAAAAAAAGAAAATGGGCTGTCATGATGAAACGATGATATAAGGAAAATCGTAATGAAGGCATGGTACAATGAAACAGGATAGGATTATGTATCTCTATTTGAATGTATTTTGGATTTGACCCAATTTAGACGTTTAAAGTATGAACTAGAAGAATTAATAGACGAAAGAGAACTTAGCCTGCATTTCTACAATTTGGGTGATAGCTATAAAAAGAAGAAGAGCATATAGGGGCTAAGGAAGCTTCCAATATGGAAAGCTCACTGATTTTATAAGGTGCGAATGTGAAGCTCACATGAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGTATAGAAAATGCTATCAGTGAGAAAAAGTCAATGGTTAATTTAAGCCTTTTAGACATTGCTTTTTTCGAAAATGCATGGAAATGATATCATTAGATAATCAATTACTGCATTTTCGCT # Right flank : TATGATGAATGGAGGACGTCCTCAAGAAAGAAATAGGCGCACTCCATGTGACAATTGACGATGCGGCAGGATTCACGGTCAGTCGTTACGGCATATGGTTTTGTTTGACTGGTATGCTTTGCATAGTTCTCAGGGCTTCAGCCGCAGAAGGAAGAAAATAAAATCGAAGTGAAACGATCTTTGTGATATGTATAATGCTCGCAATGGGCGCGATGAGAGGCAATGATGCGGGGGAATGAGGCAAGAATATGAGGGCGTACAGGGGATAAAATGCGGAAGAACCACCGAAGGATGAAAAATCCAGTGCGGTGGTTCTTTTTTTTTACTCGTCTTGTATGCCATCATTATAGGGGGAGGGGATGAAGGATGTTCCAGGATTTCAAGCTCGTAAGTGACCGGCCGGTCTCGATACAAGTAAAAGAATACGTCAATCGTTTAATTATAAAAGGGGCGCTTCAGGCGGATCAGAAGCTACCTTCCACACGAGAAATGAGCGTTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 297898-299117 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYND01000140.1 Paenibacillus polymyxa strain CFSAN034343 NODE_3_length_551573_cov_45.2895_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 297898 32 100.0 36 ................................ ACATTTCAATTCGTTTGGAATATCCTCAACTTCCAT 297966 32 100.0 35 ................................ ATCCATCATACTGAATAAACATGCAATGGCGAACG 298033 32 100.0 34 ................................ TCTGTCGGAAGAATGTTAAATTTACCCGGGTGAA 298099 32 100.0 33 ................................ CACGGTGACCGTCATACTACCAGTAGCCGGAAA 298164 32 100.0 33 ................................ GATTTAGCTAACCATGTGGCCATAAATACTATC 298229 32 100.0 35 ................................ TAAAACGGATCTGAATAACACAGCCACGTTTGTAA 298296 32 100.0 35 ................................ CCGTCGATACGCTCAAACAGATACCCGGCCTTTTC 298363 32 100.0 36 ................................ CATTGTAAAAAATACGTTAACAGACTAAAATAATCT 298431 32 100.0 33 ................................ ATATTGATTACAAGGGGTGGAAAACAAATTGAA 298496 32 100.0 35 ................................ AAGGTGTCTACCGTAGATATATTCGGCAAGGAATA 298563 32 100.0 36 ................................ AGCAAGCTCATGAATGGTCTTTTCGCGCTCATGCAG 298631 32 100.0 35 ................................ CGGCACCTACCAGGAAAGGAGTAATGAGACATGGG 298698 32 100.0 34 ................................ TTTGATGGTAGTAAACTATTTTTTAGCGATGGGG 298764 32 100.0 33 ................................ CAGCACTGGTCAGTCAGGCCTACCAACGCTATC 298829 32 100.0 36 ................................ CCAACCACAGGACGAGCCCAAAGGAATAAAGGTCAA 298897 32 100.0 35 ................................ ATGAGTTGGATAAGAAGAAATTAAAGAAGAGAATA 298964 32 100.0 35 ................................ CACCTGAAGGAACAGCATTTAACGAAAAATCAGAA 299031 32 100.0 22 ................................ CAGTAAACAATGAAAATCGCAT Deletion [299085] 299085 32 87.5 0 CG............A.............G... | C [299111] ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.3 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATGCAGCCGGTATGATGAACAGGATTAATAACTCAACTTTTGCCGAACGTTTTCATAAAATATTTTACAAATACCTTTATGATTTTCGAAAATATAAAGGTATTTTTCTGATCAATGTAGTCGATATTTCCGGATGTATTTACCCAAAGCCAGAACGTTCAGCTTTGGTGTTAACTGGTGGGACCCTGCTTTTAAAAGCGCTATCGATGAATTAAATATATTCGAATGTGCGCTTACTCCTTCACAGGTGGCAGAACTGGCAGAGGTGAAATAAGTCCAGGCAGGTATTTGTTGCTAAGCCAAAAAGCGAGTCTGTCCAGGTGCGAATGTGAAGCTCACATGAATTCTCCGAGAGATTCGCACCTCAGATTTTGTCGAATTATATCGAATATGAACAAGTTTTAAACGATCGCAAGAGGATAAGGTAATATTAGATGCGTTTTTGCCAAAATAACGCTAGAATGGTACTTAAATAGGGGGCATTTGACCCATTTTCGCT # Right flank : TTTGTTGGCTGCTAAAAGGTTTGGTTTAGAACAAGTCGTGGTTCAGTACAGTCAGCATTTTCATTTTACAAACGAAGATTTGCACGAGGAGGATTATATGAATAAAAATGATGATCGTCATGATAACACCCCAGAATAAAGAAGGCAGTCGAAAATATAGACGTACTCTTGATAAACTTTCTAATACATAAATAATCAGTCAAATAAAACGCCGTTTGGAACGGAGAAAGCAATCACTATTTATCAAGTTTGTCCCTAATTGACAATGAAGTAGGTTGGGTTATTTTTATGAACGTAAGGAATTTGAAATTCACAAATCTAATATTTAACAGTAAAGCTGATCCTAGAAAGGATCAGCTTTACTGTTTACCCATTCCACTATACAAGTAAAAGTACTTTTTTACTTGTGAGTCTTTAGCGTTCTGCCCTTAAAGAGAATATACGACAGTTCATGTTTGATAATTTTTTTATTCTCTATTGTTTTCACATAATCTATGTCA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //