Array 1 20643-19233 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCD01000003.1 Photorhabdus sp. S7-51 S7_51_scf0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20642 28 100.0 32 ............................ GTCTGTTACTTATGAACAATCAAAATATCTTT 20582 28 100.0 32 ............................ GATGATAAGCTATATCTTGTAGCGTTTAATGC 20522 28 100.0 32 ............................ TGCTTGGGATACGACGTCTTTTAAAGTCGATT 20462 28 100.0 32 ............................ TTTACCGTTCAGATAAGTGACGGCTGGATTGA 20402 28 100.0 32 ............................ AGCATTAAAGCCATCATATTCCAGTTCGAAAC 20342 28 100.0 32 ............................ TGTTGCTATCCATGATAACATTAAGATTAACA 20282 28 100.0 32 ............................ TGAATCCGAATTAACAGATTCCGACGCTATTG 20222 28 100.0 32 ............................ ACCTACATCCATCGGTATCCGGAGGGGTAATC 20162 28 100.0 32 ............................ CATGCCGAGTTGTGGATTGATGATAGTCAAAT 20102 28 100.0 33 ............................ AGTTTGAAACCATCACTACGAGAATTATTAAGT 20041 28 100.0 32 ............................ AGCGGCTACAATGTCTATGCTATTCAGTGGGT 19981 28 100.0 32 ............................ TGGGCTGAATTTATTAAACCTGACGCGCCGGA 19921 28 100.0 33 ............................ CTCGGCTATGCCGAAAGTCAAAAATTCATTCTT 19860 28 100.0 32 ............................ TTGTTGCATCGTATGGTGATGAACAAGTTTTA 19800 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 19740 28 100.0 32 ............................ TGTGCATATTTCGCCCAGAAGTGTATAGAAAT 19680 28 100.0 32 ............................ GGTGAAGAAGATAACAAGTCGTATTACGAAAC 19620 28 100.0 32 ............................ AGCATGTAAGCGAAAAGGAAAATACCGATGTG 19560 28 100.0 32 ............................ TTCTCACCTTTTCGCCGCACATAGCGGCCACC 19500 28 100.0 32 ............................ ATGATTAATCCATCGACTGCGGGTAAATCAAA 19440 28 100.0 32 ............................ ACTACATGCTTCTTACTGACGTATATAGGTGC 19380 28 100.0 32 ............................ AAAATGCTGGGCTGCTTCTGACAGGGATAGAC 19320 28 100.0 32 ............................ ACTCCACATCCGGCGCTTGATTCACATCTACA 19260 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATGCTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAGGAACAACGCACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAACTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29287-29139 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCD01000003.1 Photorhabdus sp. S7-51 S7_51_scf0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29286 28 100.0 32 ............................ AACAACAAAACCAACATGTCCTCCACCAATAT 29226 28 100.0 32 ............................ AAGCATCCCGATCACTTCGGTAATATGAATGA 29166 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTCGATGACCGAATTCAGTGAATGGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGCTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : CGGCAATGGCTGGAGAAGATGAACAGGAGTTTCGCCAACGCTGTATTAGTGGATTTCAAAAAGCTGATGCTTTAGACACCATGATTGAGGCACTACAAACAACTGCGCAACAATTGAGTCAGGTGGCACGATGAATATTCTCTTAGTTTCCCAGTGTAATAAACGAGCGCTAACAGAAACCCGCCGAATTTTGGATCAATTTGCTGAACGTAAAGGTGATAGAACTTGGCAAACGGCTATCACCCAGGAAGGTTTAAATACTTTGCGTAAGTTATTGCGTAAAACGGCACGTCGTAATACGGCGGTGGCTTGCCATTGGATAAAAAGTGGTGGTCAAACTGAGCTGTTATGGATAGTCGGGAATTTGCGGCGCTTTAACTCACGAGGAGTTGTACCTACAAATACAACACAACGTGATGTGCTGAAAAGTCAGGATGAAAATCATTGGCATAGTGTAGAGGCTATCAGCTTATTGGCAGCGATTGCCGGGTTATTTCATG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 34563-33155 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCD01000003.1 Photorhabdus sp. S7-51 S7_51_scf0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34562 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 34502 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 34442 28 100.0 32 ............................ CGCATACCAAGCATCGAATCCCCGTTTAGATA 34382 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 34322 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 34262 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 34202 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 34142 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 34082 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 34022 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 33962 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 33902 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 33842 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 33782 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 33722 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 33662 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 33602 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 33542 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 33482 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 33422 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 33362 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 33302 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 33242 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 33182 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3375-3643 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCD01000015.1 Photorhabdus sp. S7-51 S7_51_scf0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3375 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3435 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3496 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3556 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3616 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCAGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6576-7023 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCD01000015.1 Photorhabdus sp. S7-51 S7_51_scf0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6576 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 6636 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 6696 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 6756 28 100.0 32 ............................ TGATGCCGACGAACGGCAACAATGCCGGTGAT 6816 28 100.0 32 ............................ TTTGAAAACTCCCTGAAGCAATGGCGTGACCG 6876 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 6936 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 6996 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AAGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAATCCCTTGTGTCTACCGATTTCACCACCTGGGCTGAATTTGGAGGCGCGTCCCGGAGTCGAACCGAGGTTGACGGATTTGCAATCCGCTGCATGGCCACTCTGCCAACGCGCCTTTCTATATTCAACGACTAATTCAGCATCCAACTTCTGAACAGTAAGTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCACCGCTTTGAACTAGCTGATTTACTTATTTGTTTTCGTAAATCTCATGTGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 86231-87800 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCD01000015.1 Photorhabdus sp. S7-51 S7_51_scf0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 86231 28 100.0 32 ............................ AATAGGACATGCTGTTTACAGGCATTTATTAA 86291 28 100.0 32 ............................ TGTTATTCCTTTAAAAGTTGTAAATCCATCAG 86351 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 86411 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 86471 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 86531 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 86591 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 86651 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 86711 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 86771 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 86831 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 86891 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 86951 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 87011 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 87071 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 87131 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 87191 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 87251 28 100.0 14 ............................ CATACCAGAACTAG Deletion [87293] 87293 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 87353 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 87413 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 87473 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 87533 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 87593 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 87653 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 87713 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 87773 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ATGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //