Array 1 62906-62337 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAG01000067.1 Pseudomonas aeruginosa strain HUM-338 NODE_37_length_63034_cov_20.817_ID_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62905 28 96.4 32 .............C.............. TTGAGGCGGCGCTCAACCGCCTAGGCTTCTAT 62845 28 96.4 32 .............C.............. ATGCTGAGCGAGCAGGCATAGCCACCCATCGC 62785 28 96.4 32 .............C.............. ATTTCGCAGCCAGAGTGGCAAGACCATATCCA 62725 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 62664 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 62604 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 62544 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 62484 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 62424 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 62364 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-1518 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAG01000085.1 Pseudomonas aeruginosa strain HUM-338 NODE_47_length_49097_cov_17.491_ID_93, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110 28 100.0 32 ............................ AGTCGGGCTGTTGAGTCTTTCCGCTAAAGCAT 170 28 100.0 32 ............................ AAGAGAACGACTGCTGAATCAGCATGGTCATG 230 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 290 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 350 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 410 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 470 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 530 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 590 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 650 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 710 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 770 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 831 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 891 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 951 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 1011 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1071 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1131 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 1191 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 1251 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 1311 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 1371 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1431 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1491 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10911-10043 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAG01000085.1 Pseudomonas aeruginosa strain HUM-338 NODE_47_length_49097_cov_17.491_ID_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10910 28 100.0 32 ............................ ATGTAGCCGAGTGCGCTGCGACCGGCTTCGTA 10850 28 100.0 32 ............................ TGGCGACGTCCACTCGATGCTGCTGATGATTC 10790 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 10730 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 10670 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 10610 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 10550 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 10490 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 10430 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 10370 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 10310 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 10250 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 10190 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 10130 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10070 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //