Array 1 387771-388398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAG01000002.1 Yersinia kristensenii strain FCF221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 387771 28 100.0 32 ............................ GCGGAGGCTACTTGGGCCCCCGACACGGAAGA 387831 28 100.0 32 ............................ CTTGCCCCGGAGCAATGGTTATCATGCAGATA 387891 28 100.0 32 ............................ TTGAGTTATTTGTCGGGGGAATTCTATTTCTC 387951 28 100.0 32 ............................ ATCAAACAGGAAGTGATCAGCGCCATCATTGA 388011 28 100.0 32 ............................ TTGGATTCAATGGTGCCAATAAGACGGCCGAT 388071 28 100.0 32 ............................ GATGGTGGACACGTTAGTAGCTCGCGCAGCAA 388131 28 100.0 32 ............................ CATAACAACCATTGGTTGATTAGATTGGTTAT 388191 28 100.0 32 ............................ GTTCAGCGGCGTTAGTAAGTCTGGCGCTGGCA 388251 28 100.0 32 ............................ TCATTGCAGCGGCAAGCGGATAACGGTGATGT 388311 28 100.0 32 ............................ ATCTTCCCCCGTAACGTACACCGCCCCGCCCG 388371 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTTCGTTTCTCCTGCGTATTATCCCTGTTTAATCTCCTGAAATACCTTAATTTTTATCCTGTGATATTTATTCTTTCCGATATAACAAAACGAGCAAAACCCACCCCAAAATAGTGAACTATAACTTTTTCAAACTCCCCTTTTGTTTGTCACATCATCCTCAGCAGAAAAGGCTTCATGACATTTTACCTTAATCTCAACTTGAACCCTTTTTTTAGAGTGTTTTTTAACTCGTTGATTTTATATGAAAATCACCAAGGTTTTAAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCAATTGCAGCTTGAACAAATTTCTAAGCTGCCTGTGCGGCAGTGAACAATTCGTTTTCGCGCAATTGCCACGCTATCGCTTTCTAAGCTGCCTGTGCGGCAGTGAACCTGCGCACAATCCGCAGAAGACAGACCCAGACTTTCTAAGCTGCCTGTGCGGCAGTGAACATAACGAAAGTAAATATGACGCGGTCGACGTATTTCTAAGCTGCCTGTGCGGCAGTGAACGCGATCAGTGCTGCAATTGCAGCTTGAACAAATTTCTAAGCTGCCTGTGCGGCAGTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 388776-388508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAG01000002.1 Yersinia kristensenii strain FCF221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 388775 28 100.0 32 ............................ TTTGTTCAAGCTGCAATTGCAGCACTGATCGC 388715 28 100.0 32 ............................ TACGTCGACCGCGTCATATTTACTTTCGTTAT 388655 28 100.0 32 ............................ GTCTGGGTCTGTCTTCTGCGGATTGTGCGCAG 388595 28 100.0 32 ............................ GCGATAGCGTGGCAATTGCGCGAAAACGAATT 388535 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGGGAATTCTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTGTTCAAGCTGCAATTGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTAAGCTGCCTGTGCGGCAGTGAACCGGGCGGGGCGGTGTACGTTACGGGGGAAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACACATCACCGTTATCCGCTTGCCGCTGCAATGATTTCTAAGCTGCCTGTGCGGCAGTGAACTGCCAGCGCCAGACTTACTAACGCCGCTGAACTTTCTAAGCTGCCTGTGCGGCAGTGAACATAACCAATCTAATCAACCAATGGTTGTTATGTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGCTGCGCGAGCTACTAACGTGTCCACCATCTTTCTAAGCTGCCTGTGCGGCAGTGAACATCGGCCGTCTTATTGGCACCATTGAATCCAATTTCTAAGCTGCCTGTGCGGCAGTGAACTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1279671-1278562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAG01000001.1 Yersinia kristensenii strain FCF221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1279670 28 100.0 32 ............................ TCCCACTCACCCTCGCCGAGCGCAAAAAGTAA 1279610 28 100.0 32 ............................ AAGAGAATTAGCGGCCCAGTTTGTTGACTGGA 1279550 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCAGTAGCAGCT 1279490 28 96.4 32 A........................... ACCTGAATAGCTTCCGGGTGACTGCCAATGGG 1279430 28 100.0 32 ............................ ATCAGCTAATACGCCAGTTACAACAATATTTT 1279370 28 100.0 32 ............................ GCATTAAATCCAATTTGAGACTTAACAACACC 1279310 28 100.0 32 ............................ GCCACGTTCTTACCGTCAGCCTTGCCTAATTT 1279250 28 100.0 32 ............................ ACTGCTTTATACTGTTCCGGACCGGTATACGT 1279190 28 100.0 32 ............................ CTGAGATAAAACGGCCCATTATTTTCAAGTCT 1279130 28 100.0 32 ............................ CCGCAATGTTGGCGTGGTGGAATGATTTCTAC 1279070 28 100.0 32 ............................ ATAAAGGTCTCCTTGTGAATCAATATCAATTA 1279010 28 100.0 32 ............................ GAAACGCGGTGCAGCACGGAACGCAATAAGCT 1278950 28 100.0 32 ............................ AACTCAAGGCCGTAAAGACTTGGACGAAAGCA 1278890 28 100.0 32 ............................ AGAAGCATTGATATCTTCGGAATGAAGCTTTC 1278830 28 100.0 32 ............................ GCCAGCATTTGGGCGTTAGTGCCGGAGCACTT 1278770 28 100.0 33 ............................ CTGATCGCGATAGAGTCTCTCAGATAAAGAGCG 1278709 28 100.0 32 ............................ AGTCATTGTCCCGCCAGATAATGACAATTTGC 1278649 28 100.0 32 ............................ TAAACCGCCATTGCTGAATGCTGAACCGATAA 1278589 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGCCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCCGTGCCAGCAGCGGTTAAATACCGTGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGTTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATTGAGTTGGCCGAGAATATTAAAAAATCCTTTTTTATGATTTTGGTGGGTTATTTGATAATAATCAGTAAGTTATTAATATTTCGTTACT # Right flank : TCTATCCGACGTCTTATTTCTCCTTTTTTGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTAGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATAATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCATTGGGCGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1290032-1288564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQAG01000001.1 Yersinia kristensenii strain FCF221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1290031 28 100.0 32 ............................ AACTGGCAGGGGGAGACTATGAAGATGAAGGA 1289971 28 100.0 32 ............................ AATATTCCGGCCCTCAGTCCGTTAGCGAGGCA 1289911 28 100.0 32 ............................ ATTCTGGATGTTGACCCGAAAGGCGGCGCGTT 1289851 28 100.0 32 ............................ AGTATTGCAGCAACAGCTCGATAATGGCGAGA 1289791 28 100.0 32 ............................ ATTCTGGATGTTGACCCGAAAGGCGGCGCGTT 1289731 28 100.0 32 ............................ AATATTCCGGCCCTCAGTCCGTTAGCGAGGCA 1289671 28 100.0 32 ............................ ACGAGCAAATCTGATTAACTATTGATGTAAAT 1289611 28 100.0 32 ............................ CAACATAGGGAACATTGTTTGTTATATGCAGG 1289551 28 100.0 32 ............................ GCATGGATACGCAGTCATATATCTATATGGAT 1289491 28 100.0 32 ............................ TTTCATGGCATCTTCCATGCCGGTGTAACTCT 1289431 28 100.0 32 ............................ TTCATGTGACGAGCGAAAGCAGCTTTGTTTCC 1289371 28 100.0 32 ............................ CAATTGCGCCGGGATCAATGTAGCAAAGTCTA 1289311 28 100.0 32 ............................ GCGCCGGACTGTCGGCCACGGTCACACTGCGG 1289251 28 100.0 32 ............................ AGCATCAACATAAATCGCGAGGGTGTCATTTC 1289191 28 100.0 32 ............................ AGACAGCGTTTAACGATTGAGTTCATCGAACA 1289131 28 100.0 32 ............................ GCTAACGTAGTGAATCGCGTCCATGTCTTACC 1289071 28 100.0 32 ............................ CAAATGCGCAGCCATTAACCCATCAGCATAGG 1289011 28 96.4 32 C........................... GGTAGCTTGGTGACTAATGAAAGCAAATGAAT 1288951 28 100.0 32 ............................ ATTATTCAACCCTCACGCTACAGTCGCTTAGT 1288891 28 100.0 32 ............................ CATCAGCCCCGCGCCGTTAGCAAATTTGGGTA 1288831 28 100.0 32 ............................ CATCAAAAATGCAGATGGCTCAATTAACTTTC 1288771 28 100.0 32 ............................ ATTCAAGCTATTGTCTACGATATCTCGCAGGG 1288711 28 100.0 32 ............................ AACGGGGCGAGGCGGTGCGCCCTCTTTTCCCG 1288651 28 100.0 32 ............................ AGCACCTATCGCTGGCCCCATAAGCGACGCAA 1288591 28 78.6 0 .....................AGCATC. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGAT # Right flank : AGATTGAGAGCCAAAACACATTTTGTTACTTACAGTCGGCTTATTACTGTTTTCTATTACCGGCTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCACTTACTAGCAAGATATAATTAACCCGTTAGAACGATTTGGGCATTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTGAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGCGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCTCTTTATTGGAATATTCCCATCGCGAATACCACTGTTATCATGCTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGCGAGTTTGCCCGCGCCGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGCGCGCCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //