Array 1 1406-1631 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFN01000028.1 Companilactobacillus salsicarnum strain TMW 1.2098 seq28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1406 28 100.0 38 ............................ AGTAAAACTTTGTTTAAAATGAACATTACTTCTGCTGT 1472 28 100.0 38 ............................ AGTAAAACAATAGTGATTCCCATGGTAGCTCTAATAGG 1538 28 100.0 38 ............................ AGTAAAACAAAGATCAGCAGCAGCTGATGGATGAATTG 1604 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 100.0 38 GTTTTTGTACCTTAAAGAATTTAGAAAC # Left flank : TGATCGATGAAAGATGAGCCTGTAGATATTCGCGATGTTCTATTAAAAATGGCTGGTAAAGCATTCATTGATAAAACTGTCACCTTTGATGGTGACCCACATGCTTACACAGGTGAAGCTGCAGTCAAAGTAGGTCTAGATATAGTTGATTTAGTCGAACGATTTGATAGAGAATTTAGTTATAAAAAAAATAAATAAGGAGTTTTACTATCGTGGGAATATTTACAAAAAGTCAAAAGAATTTATCTGATTCTATTTATATAAAGAAAGTTAAACCCTTACTTAAAAATGACGGTCTCAAACATGTCGTCATGATTAATAGCTTTAGCAAATGGATTGATCAAAACTTTAATGCTGAAGACAAATACACCACTCAAATAGATGGCATACTCTCAAGCATGCAAAATGATGGGTATGAAATCTTAGATGTTAAATTCGATTCATTACAGAATCAAGGTTTGCTGAAAGATATGGAAGGTTTTCATACCTTAATTATTTAT # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCTTAAAGAATTTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 75523-71856 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFN01000004.1 Companilactobacillus salsicarnum strain TMW 1.2098 seq4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 75522 36 100.0 30 .................................... GAGAAATCAGCCACTAATAATGTCACTAAA 75456 36 100.0 30 .................................... CATGTAAACTATCGTGACGTCTAATTCTTC 75390 36 100.0 30 .................................... AGTGTGAGCCGTTCATCGTCGCTGTGACAA 75324 36 100.0 30 .................................... AACATTAGACGCCCCAGGTCAATACACTAA 75258 36 100.0 30 .................................... GAACTTGTCTATGTCCCGACTCCACAAATG 75192 36 100.0 30 .................................... CCACCATTTGGGGCTACGTGCTTGTTATTA 75126 36 100.0 30 .................................... TGAAGGTAATTATACTCAATCAAACGTAAA 75060 36 100.0 30 .................................... TGCCTTCAAATTGGAATCTTGTAGTAAAGC 74994 36 100.0 30 .................................... TTTTCGATCAATGTAAGAAGCAATCCGGCT 74928 36 100.0 30 .................................... CTTTTAATACTGTGTTTGCATCTACTGCCA 74862 36 100.0 30 .................................... AAGAAAGTCCTAGGATGTCTATATACCATA 74796 36 100.0 30 .................................... GGACTGGATATCGTTCCCAACATTCGTAAA 74730 36 100.0 30 .................................... TAAGTATAAGTCCTCTATGGTTTCATACTG 74664 36 97.2 30 ................T................... CCAATAAAATAACCGTTCAATGTATCAACC 74598 36 100.0 30 .................................... TGAGTAAAAAGAAATATTGATAAACCCAAT 74532 36 100.0 30 .................................... AGTGATGATAGGTAGGGTAGCCATGCGGAA 74466 36 100.0 30 .................................... GACATCGGCACCAACGTATCAAATACAAGG 74400 36 100.0 30 .................................... GTTTGAGAACTACAACATTTTAACTTCACA 74334 36 100.0 30 .................................... AGTCGTAAGCGACGTTGGCATCAAATGGTT 74268 36 100.0 30 .................................... TTGCTTCCACAACATTCATTAATGAAGTTA 74202 36 100.0 30 .................................... TTCCATTATGGTATTCCTTCTTTTTTGTTG 74136 36 100.0 30 .................................... ACGTCTGATAACGATAGGTGTGTTCACGAT 74070 36 100.0 30 .................................... AGTTGTTACTGAAGATGGTGTGGTCATTAA 74004 36 100.0 30 .................................... TTATGACAAAGTAGACGATTCATTCGTAGG 73938 36 100.0 30 .................................... TGCTGGTGCAGTAGGTTGTGCTGGGTCAGC 73872 36 100.0 30 .................................... ACCAGAAGCTCTAGTTGCATCCAAAATTGA 73806 36 100.0 31 .................................... ATCTGATTTTTCTTTATTGTCATCTTCAGTA 73739 36 100.0 30 .................................... CAAGCATACTCACAGAGCTGTGACCGAAGA 73673 36 100.0 30 .................................... TAGAAATGTTGGTAGTAACTGATCAGCTAA 73607 36 100.0 30 .................................... TGTTCGAGGTGTCAAAAAAACAAATTAGGG 73541 36 100.0 30 .................................... ATTTTTTGTTTGCTCTTCAACTTCATCAAC 73475 36 100.0 30 .................................... TTACTATATGGTTTTAACCGGCGCATACAC 73409 36 100.0 30 .................................... TGAACCCAAGCAATTATTGGCATTTTGAGG 73343 36 100.0 30 .................................... ATCCGTAGCCGGAGCAATCATGGTTGCTGA 73277 36 100.0 30 .................................... CGATGATGGTCCATACGTTACATTGTCAGG 73211 36 100.0 30 .................................... GATATGTGACATCTTCATATCCAAACCACG 73145 36 100.0 30 .................................... GTCTATGTCCTCGGAAACCATATCTACCGC 73079 36 100.0 30 .................................... AAGCGGCTTTTTGTTCTTTCTTCCAGCCTT 73013 36 100.0 30 .................................... CCACCAAAAGTTCCAAGTATTAATGTTCGT 72947 36 100.0 31 .................................... CTTTCTCTTTTACTGATTTAACTTCGAGTAA 72880 36 100.0 30 .................................... GAAAAAGGTTAAAGCGAACAAGTCCACTAA 72814 36 100.0 30 .................................... AAATGGACTTGCTACCCTCATCTGATTTAC 72748 36 100.0 30 .................................... CTATAATTTGATTGCTAACACATCGATTTA 72682 36 100.0 30 .................................... GATTTAACAATCAAAAAGGCATTCGATTAC 72616 36 100.0 30 .................................... ATTAGTTTGTTAGTTGTATAGCCAATTAAG 72550 36 100.0 30 .................................... GCTTAATAGTATCCATAAATGCTTGATTGT 72484 36 100.0 30 .................................... CAGCAACAAACACATGTCTAATGACAGTGG 72418 36 100.0 30 .................................... TCTGATCCCGTCCATAAATGCATTCCATGC 72352 36 100.0 30 .................................... AGCTTGACCAACATATGCGTAGAAATCAAT 72286 36 100.0 30 .................................... GCATTCCTATTTTTCTGGAGATGATCAAAA 72220 36 100.0 30 .................................... AAAATATAGATATATCTAAGGGGTCTTATA 72154 36 100.0 30 .................................... GTCAGTAAGAGACTTTACAAGTATGGCAAT 72088 36 100.0 30 .................................... ATTTTGCAACTTCATTCAAAGCTGGTGTCA 72022 36 100.0 30 .................................... TCTCACTTGTTGACTTATATAGTCAACACA 71956 36 100.0 30 .................................... TAAATACAATGAGTCTATTTTGACTGACAA 71890 35 80.6 0 .......T............-..CC..C.T.....T | ========== ====== ====== ====== ==================================== =============================== ================== 56 36 99.6 30 GTTTTAGATTTAAGTCATCTCAATTACTTAAGAACC # Left flank : TCTTCAAACTTACAATATAAACTCCATGCCAAACTTGAAACTTGTTTACGATCACATTGATAAAAATTCAAAAGTCGAATATAAAGACGAGTTTGAAAAAATAAACCTGAAGTTAAATGAGTTGGTTTTTGACTCTAGTTGCCCCTTTGATGGACCATTTGATTTTGATAATATGTCGACATTTGAAAGTATGTTGAAATTCAAATTATTAAAGTTTGATGTGGGTAATTGGCAAAACTACTATGATAAAATGTTATCAGTAATCAGTTTTTACAAGGACTTTACAGATAAGAAATTACTAATTTTTCATGATTTACACAAACTACTAAATCTAGAACAGGTGAATGAAATGAACAATTATCTTAAAACCACCGAATTATCTATTGTTAGTTTCGAATCATTTGATATGTCTACTAAAATTGAAGGTCTTAATTGCAAGGTTTTCTCAATTGATAGTGATCATGTCAGATTCGATTATTAGCAAAATTTAATTTAGGACG # Right flank : ACATTCAGCAAAAAAGGATCCGCCCCAAAACAGGCGAATCCTTTTTAAAATTCTAAACATCTAGTCAACCAATCGATCTGGCATCTTGCCTTCCAAGAAGCTCCAAGTACCATTTGATATCATCAAGACATCTTGGTCAACTCGTGACAAGCTCTTATTGATCAAGTCTTCATGGCCTGTCATCACTTTTTCTGTCCAATGTGGATCGAGTAACAATGAACGTCCAACTCCAACTAAATCGGTATTTTCCAATACTTCTTCAGCATCAGCTTTTGTTCTGACATCCCCAATTCCAATAATTGGCATACGTCCGGCAACTTGATCCTTAATATAAGCAAGAATTGGCTTGTCTTTGTAATCATCACTTACTGAAACTCGCTTATAGTCGCCCATTGAAATGTGTAGATAATCTAATGGCTTGTCTGTCAATTTATCGACTAAATACATTGTGTCCGACATGCGAATTCCAGGATTTTCATATTCCTCTGGTGACAATCGGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTTAAGTCATCTCAATTACTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //