Array 1 473375-474256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIT010000002.1 Salmonella enterica subsp. enterica serovar Derby strain 45 NODE_2_length_657901_cov_34.0574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 473375 29 100.0 32 ............................. GGGCTAACGCCATTAAAAGAACTGGTTCCGTA 473436 29 100.0 32 ............................. CGGTGCTAAAGTTCGGAGAAGATCCCCACGCC 473497 29 100.0 32 ............................. TAGCCGGGTTCGAGTCGATGAAGCAATCCGTC 473558 29 96.6 32 ............................A CGCGTCCGACTGAAATCACGCCTCTGTATCCC 473619 29 100.0 32 ............................. ATAAAATTAAAAATGTGACCCATGTCAATAAA 473680 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 473741 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 473802 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 473863 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 473924 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 473985 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 474046 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 474107 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 474168 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 474229 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCGGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490938-493651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZIT010000002.1 Salmonella enterica subsp. enterica serovar Derby strain 45 NODE_2_length_657901_cov_34.0574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 490938 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 490999 29 100.0 32 ............................. CACCTGGTCGAGGGCTCGAATCGGTGAATAAT 491060 29 100.0 32 ............................. AAATCCATTCTTGCGATACGATTAATTTACTT 491121 29 100.0 32 ............................. CAGCCAGTGCCGGTAGTGCAGACGCAGCAGCC 491182 29 100.0 32 ............................. GCGATTACTGATGGCGGCGTGTGGTTCGGTGA 491243 29 100.0 32 ............................. TATGCGTAACCAGTAAATAAAACTGTTACGTG 491304 29 100.0 32 ............................. ATTTCGTTATACCCCTTCACAACCTCGGCAGG 491365 29 100.0 32 ............................. TTATGCGGCTTTCTACTCCAGTGCGGCGCAAG 491426 29 100.0 32 ............................. TTGATGTCATGTCGTGTACAGACGCTGCGTCA 491487 29 100.0 32 ............................. GGTACGCGACATATAACGGCATGGGGCGTGAA 491548 29 100.0 32 ............................. CGCTGGTTTATGACATCGCCGACATGATCAAA 491609 29 100.0 32 ............................. ACTGCGTGACGCCGCCATCAGGAATGTTAATA 491670 29 100.0 32 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTG 491731 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 491792 29 100.0 32 ............................. TAACCTCTGAATTAAGATGCGGTTTGTACGGC 491853 29 100.0 32 ............................. CCGGATTAACCGGCTTCATTGTTGGTGGGGGA 491914 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT 491975 29 100.0 32 ............................. GCGTACACGGTTAAACTTATATAGTGACACGT 492036 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 492097 29 100.0 32 ............................. TACCAGGATACCCTGAAACGCTACCGTGTCCC 492158 29 100.0 32 ............................. CGCAGCAGCGAAGACCTGAAAGACGCCGTGAG 492219 29 100.0 32 ............................. GACTGTTTTCATATATCACCCCTTGCTCCAAA 492280 29 100.0 32 ............................. CAGCGCCCGCCGGTGTTGCGCTACCGCGTGTT 492341 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 492402 29 100.0 32 ............................. CCATTGATGAGGCTATCGCAGCCGCACAACGG 492463 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 492524 29 100.0 32 ............................. TCTCGCCGCATAAAAAAAACACAGCTCTACTA 492585 29 100.0 32 ............................. TTATCGGACTGGTCAAAGAACTCCGCGAACTG 492646 29 100.0 32 ............................. AATGGTTCGATATGAGCAATAAAGAACCTGAC 492707 29 100.0 32 ............................. TTACGATCAAATGTTAGCGTCATTTTATGACC 492768 29 100.0 32 ............................. GCAGTCGCTGACCTGTACGCCCTGTGCTGGCA 492829 29 100.0 32 ............................. CGCTCGCATGATGGCGCGATTACTTAATGTCA 492890 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGACTGAACA 492951 29 100.0 32 ............................. TCTCGCCAGTGGCCTGAACCGAAAGACGGTGA 493012 29 100.0 32 ............................. CACATCACGGATGTGGTCTGCATTTTGAAATC 493073 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 493134 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 493195 29 100.0 32 ............................. TTGACGCGGAGATATATTCATTCAATAAATCC 493256 29 100.0 32 ............................. CGGAACTTGTAAAGGCGACGCAGGGTTTAACC 493317 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 493378 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 493439 29 100.0 32 ............................. CGAAGTTTCAGGCGTTACCGCCTGCGGAACGG 493500 29 96.6 32 ....A........................ AAGACAACTCCTGTCTTTCCATCACTCGAAGC 493561 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 493622 29 96.6 0 A............................ | A [493648] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGTCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCTCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //