Array 1 491079-490209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBX010000001.1 Wohlfahrtiimonas chitiniclastica strain DSM 105838 NODE_1_length_491126_cov_74.475509, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 491078 28 100.0 32 ............................ GCTACTAGATCAGGATGAAGCCCGATTAACTT 491018 28 100.0 32 ............................ GACAACAGATCCGGCAGGCAATAGGAAGATGG 490958 28 100.0 32 ............................ TTGCGTTGATTGCTATAAAAATACAGCTTATT 490898 28 100.0 32 ............................ CTTATCGTCATTGTTCGATTATTAACTTTTGA 490838 28 100.0 32 ............................ AAGCAAATAATTTGAGCTGTTTACCCATTGTT 490778 28 100.0 32 ............................ TGATGGCGAGTTATACATCGTTGAGGATTGTA 490718 28 100.0 32 ............................ GCAAGCGCTATCAGTCAGTTTCCACTTTGCTT 490658 28 100.0 32 ............................ TAACAAAATATATCGCGTTTACAGATCGGATG 490598 28 100.0 32 ............................ ACGCAATAAAAAAGACCGCCTAAGCGATCTTG 490538 28 100.0 32 ............................ GCCCGAGTTGATGCTTCTTAGAATCAATTTCA 490478 28 100.0 33 ............................ GCGTTGATCTACTGCAATATCTCTATTTGAATC 490417 28 100.0 32 ............................ AATACCAGCTTTAAAGCAAAATCCTGAGCAAT 490357 28 96.4 33 .............C.............. CATATGTGCACTTAACAAAACACTAATCATTTT 490296 28 100.0 32 ............................ ATTGCAGCCGGGGGAATATGATCTTCCCGTTT 490236 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATAGGCAGCTTAGAAAGCTACTAGATCAGGATGAAGCCCGATTAACT # Right flank : AGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAACAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGATATTGGTGTGAATGCAGAAATTGAAAATAAAAATGAAATCTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCGTTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGCGGGCCTGAGGTTTGTACGCCACTTGAGCGTAATTCATCCATAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2778-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBX010000006.1 Wohlfahrtiimonas chitiniclastica strain DSM 105838 NODE_6_length_171961_cov_76.418119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2777 28 100.0 32 ............................ TAATACTGAGCTTGCCACTTTATCTAATGAAT 2717 28 100.0 32 ............................ ACAGAAGAAGCAAGAAGTTCGATAGCTACTCA 2657 28 100.0 32 ............................ AACAATTGCCGCGCCAATGATTTCAATATTAC 2597 28 100.0 32 ............................ TCCCAGCATTTTAAGCATAGAAGGATTGGGAA 2537 28 100.0 32 ............................ ATCAGAACGCTTTGACGAGTTTTGGAATACAT 2477 28 100.0 32 ............................ AAAATACCACTCATAACAACCCCCTGCTATTT 2417 28 100.0 32 ............................ ATCCCCTGATATGACAATTGAGCGTCAGGACA 2357 28 100.0 32 ............................ GGGCATTTTTCTTATTGATGCCTGGACATCTC 2297 28 100.0 32 ............................ AACTCTCTCGACTATCAATATATGGATCTGTT 2237 28 100.0 32 ............................ TTGCCATTTGTCATGTATTTAACTTCAGGATC 2177 28 100.0 32 ............................ ATCACGATCACCAACCAGCTGAATGCCGTTCA 2117 28 100.0 32 ............................ ACAATAAAGAACCATCCAAGCGGTATCCCGTT 2057 28 100.0 32 ............................ AATACGCTATCAACCTCACTTGGATGCATGAG 1997 28 100.0 32 ............................ ATTGCCACAGATCAGCAATGGCATCGCCTCAA 1937 28 100.0 32 ............................ GGATCAATTCAAGGAAGCCGAAGAAAGCACAG 1877 28 100.0 32 ............................ ATCGCGATCGATACACACCAACTCTTCACCTG 1817 28 100.0 32 ............................ GTCAAAATATTTTCAAATTCTTCTTTCACTGA 1757 28 100.0 32 ............................ GCTTCTCATGTTCAGCACGTTCTTTGGCTCTT 1697 28 100.0 32 ............................ AATACAAAATCAAACAAATATCTAATCTAACA 1637 28 100.0 32 ............................ ATGCAATTAACGCCAGACGTTATTGATATGGT 1577 28 100.0 32 ............................ ACCAAGCGCTTGATGACACAAAAGTTTACGAA 1517 28 100.0 32 ............................ GCCACCTTCAGAGCCAGAACCGCCACCTTCAG 1457 28 100.0 32 ............................ AATTGATCATCGCACGTGCCATTGTTGAGAAC 1397 28 100.0 32 ............................ CGGAAAAGACCGCGCCAACGTACTCGATTGTC 1337 28 100.0 32 ............................ GTTCAGCATGTACATTGTATCAACTATTATTC 1277 28 100.0 32 ............................ GCCCACAATTGGTGCCATCGAGGCTGAATCTT 1217 28 100.0 32 ............................ GTAGCCTAAGCCGTGATTAGAAACTTGCTGAC 1157 28 100.0 32 ............................ ATTGGCACCCACTGTCCAAAATTCACTTCGAC 1097 28 100.0 32 ............................ GCTGTACCATTACTTCTTGAAGCTTTGCCGTT 1037 28 100.0 32 ............................ ATTCCCTGTAATGATTGAGACAGTCAAATATA 977 28 100.0 32 ............................ GGCACCCAATACGTAACTTGTTGAGATGTTTT 917 28 100.0 32 ............................ TGGTTCAAGATGAATAAATATGCGATCACTGA 857 28 100.0 32 ............................ ACGAGTATTCAAATCAACATAAAGCATAACGC 797 28 100.0 32 ............................ TGGATGCGTATTGCTGACCAGCTCTGGTCACA 737 28 100.0 32 ............................ TTTATCCGCGTGAAGGCGGCAGCAACTTTGCG 677 28 100.0 32 ............................ ATTGCCAAAACATCAGAAGTCAATTGCAACCC 617 28 100.0 32 ............................ AAATCACGCCCCAAAATTGGTTTTTCTGAAAA 557 28 100.0 32 ............................ TCCCTATTCTACCGCCATGAAGCGTTTACTTG 497 28 100.0 32 ............................ GGCGGCAAAAGTGGAAGGCGGAGCATTGGTTT 437 28 100.0 32 ............................ TATTCGCACAGATTTTTTTTTAGAGATTTTCT 377 28 96.4 32 .............T.............. GCTCGAACTGTTGCCGCCGCTTTAGGCTTTTT 317 28 96.4 32 .............T.............. ACCTCATTCGGTGTGCATGATCGTGGATGGTG 257 28 96.4 32 .............T.............. ATTACAACAAATATTATGCAACGCTTGACAAG 197 28 96.4 32 .............T.............. GCTTCATCATCGCTAACGGCAACGCCAAACCT 137 28 96.4 32 .............T.............. TTTACCATCCTCAATCCATGCTTCACTAATAG 77 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 46 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTTGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCCTCCATTAAGCCGGTGCCAAATCGTGTGATGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGCTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCAACGGAGGCTGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : AGCTACTAGATCAGGATGAAGCCCGATTAACTTGTTCACTGCCGCATAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 129112-128282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBX010000006.1 Wohlfahrtiimonas chitiniclastica strain DSM 105838 NODE_6_length_171961_cov_76.418119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 129111 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGGCCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATAAACTGCTGAAATCATGATGTTTCCAATGGCATTGTGATAGTTTTTACT T [129108] 128909 28 100.0 32 ............................ AAGATCAAACGGATTGGCATTATGAATGTGAT 128849 28 100.0 32 ............................ CAAAAAAATACATTTATTTACACTCATTATTT 128789 28 100.0 32 ............................ TGCGCCCGTGAATGTGAGCGCGTCTTGTTTTT 128729 28 100.0 32 ............................ TGTGTAGCAACCTCTTTATTCTTCTTGTTAGA 128669 28 100.0 32 ............................ CTCTGCTTCTGCTTTAGATATTACCTTGCGTT 128609 28 100.0 32 ............................ AGCAAGGCCAAAAGCAAGAGCGCACAGAATGG 128549 28 100.0 32 ............................ AACCACTCTTTTGAATCTCCCAATGAATCTCC 128489 28 100.0 32 ............................ TCTGCGTCATTCGATTAACAAACTAAAGGTAA 128429 28 100.0 32 ............................ CGATGAAGTGGCACAAAAAGAATTGATTGCGC 128369 28 100.0 32 ............................ GTGTAGTAACACGGGGGACATGGTGCACTTAA 128309 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 12 28 97.6 45 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTATATATAACATATATCTATAGTATGTTTATTGGATGTCTAAAATCCTAGCGTACTTTTTCACAGAGGTAAAGTGCTGATCTTTGCCTTTATGAGATTTTTTTGTAAAATTTTATTTAATGGATTGAAATAAAAGCATAAAAAAATTATGTTATGGGGGGTTGAACATATTTAAGGAGATCAATATGAAAAAATTATCAGTATTGCTATTGATGGCAGTAGGTTTGGTAGGTTGCGCATCTGTGGAGAAGGATACAGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : GACCGGAGCTGTGCCATCGCAATGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCACCATAATACGCCCAAAGCAGGACAGGCTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTGAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCGCGGATGCCCACACGGTATTTACCGAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCCACATTGCCATAACCATGGGCAACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCAGAATGGCGCGC # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //