Array 1 6201-6769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000208.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6201 28 100.0 32 ............................ AATGATTGAGACTTTTGGAAGCTGGTTCGAAG 6261 28 100.0 32 ............................ TCCAACAGATAATGTTTGCAATAGCGCCAACA 6321 28 100.0 32 ............................ ACTACTGGCACTGGGTTTTAATGTAGTCCTGC 6381 28 100.0 32 ............................ AGTGGCTAACTGATGATATTGGGCATCCAAAA 6441 28 100.0 32 ............................ GCAGAAAGAGGCGGCTATCTGCGCGGGTTATG 6501 28 100.0 32 ............................ TGACCCGGTAGGGCCGGTTACGAACAATGCGT 6561 28 100.0 32 ............................ TTTTTTTGATTTAAAAATATCATCAGGGCCAG 6621 28 100.0 32 ............................ GGGATGCACTGGGGTATTCGGCTCAATAACAA 6681 28 100.0 32 ............................ ATTTTAAAAGGTGGGACAACAAAACTGCCATA 6741 28 89.3 0 ........................T.TT | T [6762] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGAAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACCGTTGAAAATCTGTCTTCCTCACACCTTATTTTGACCCTTTTTTAAGGACTGATTTTAATCTATTGATTTTTAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TAACGGAGGCAACTATGAGTTATACCCGTTACGAAACTGATGTGGTCGTTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGTCGAGGAAATTGAGGATGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGGCAGTTTTGTTGTCCCATCTTTTGATGTGGCAATTCCAGCTTGAGCACCGTGGTTCAAGTTGGCAACGAATTATCAAGGAACAGCGAAAGGCACTGGTATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGTCTGATGCTGTTTCTTCCGCTGTCGATGAAACCGGACTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAGGAGTTCTATCCTGATTAAACTTCAATGAGTTGATTTATTTGACGCACTAACTTCGATTGGTGCGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43797-44964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000003.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43797 28 100.0 32 ............................ AATCGGAAGAAAAGAAGCAGAGTATGCCGCGG 43857 28 100.0 32 ............................ ATTTCATGGCTTCTACAGCAGCTACAACGGTA 43917 28 100.0 32 ............................ GTGACGCTTTTGTGCGAACGGATTTGCCATAC 43977 28 100.0 32 ............................ TATAAAGACACTATTCATAATAAGCAATTGAA 44037 28 100.0 32 ............................ AAGTTCAGGATGATTAGGGTCCCATTTAGCTG 44097 28 100.0 32 ............................ ATTGCAGTCCAACTTGTCGTACAAAAGTAGAT 44157 28 100.0 32 ............................ TGATGCCGTGAGAGTAATCACTTCTTTATTGT 44217 28 100.0 32 ............................ TTCGCTTTCCTGATGGAATGCGTGATGCCATT 44277 28 100.0 32 ............................ AGTTATTAATCTGAATAAACTCATTTCCATCT 44337 28 100.0 32 ............................ TTTAAAAATTACCGTCGATGTTGAAAACGTGG 44397 28 100.0 32 ............................ ATCAAGAATCAATCCATACTTATCATTACAAT 44457 28 100.0 32 ............................ GATGATTGAAACATTTGGAAGTTGGTTCGAAG 44517 28 100.0 33 ............................ AATCGGAATCATTGTGTTGAGAAGTCTCTTCAA 44578 28 100.0 32 ............................ ACAGTGATATCGCAGCCATTGACACACCTATC 44638 28 100.0 32 ............................ ATGTAAACATAACTTTGTATTTCAATTGCAGT 44698 28 100.0 32 ............................ TTTACCAGAACGCGTGGGGGCATAAAGAATAA 44758 28 100.0 32 ............................ CACAGTATGGGACAATTTGTCCCACAGTATGG 44818 28 100.0 32 ............................ AGAGCCTTACAGCAAAATCGCCTATCAAAACA 44878 28 100.0 32 ............................ GGTCGTGAATACGCGGCTCTGGCCCGGTCGCA 44938 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAAGAAGCTGGTCTGGAAGTTGTTATGGATCGCTGCCCGAAAATTGAAATTCCGAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAGGAATGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGAATATTGAGTTTACTGTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATTTTAAGGCAATTTTGGTTGTTCTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAGTATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGGGATTAGTTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGAGATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 312-1358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000036.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 312 28 100.0 32 ............................ ATCGACTAAGATCCATTCCTTAGATCTTAGAT 372 28 100.0 31 ............................ TGTGCGAACGTTTTCTTTACGGCAAGAGTCA 431 28 100.0 32 ............................ GCTGCGATTATGTCTCTGTTCTTAAGTGTACC 491 28 100.0 32 ............................ ATCTATGTCCCATCCCATTCCACTTACTAGGC 551 28 96.4 32 A........................... CAGTAAATCTACATTTAAGTAGACGTACTCTT 611 28 100.0 32 ............................ TTTGACAAAAGAATATAATGCTATACGAAAAG 671 28 100.0 32 ............................ TAATATAATTCGGCATAAATACCAATTTCATC 731 28 100.0 32 ............................ AAGAATATAGGACTTCTAATACTGATTCGTAT 791 28 100.0 32 ............................ TGAATCATTTGGTCGTAAGGCCCTTAAAGTTA 851 28 100.0 32 ............................ TTGACAAACTGTCTCGCATGTTGGAAGCTTGG 911 28 100.0 32 ............................ GCAAACTTAGGATGGATACGTGCTCTTAGATC 971 28 100.0 32 ............................ TATAAATCACAAAGCTTGGTTGCCGCCAAGAT 1031 28 100.0 32 ............................ TTTGAGGATGGCAGGCTCTACGGCGACTTGGG 1091 28 100.0 32 ............................ ACCCGTCCCACTCCACTCGTGAGTGATGCTAT 1151 28 96.4 32 ....................T....... AAAATTAGGTCTTATTCATTTGACAGCAGAAG 1211 28 100.0 32 ............................ GGAATAAATCCAACTTGCTCACGAGAAACAAC 1271 28 96.4 32 ........T................... ACCCGGACACTGGTGCGCTGGGCGAAACTGTC 1331 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTAGGGATTATTTTTAGCCTGTTATCCATACAAATAACAGGCTGCCCAAAGTCAGTGATTGAATTTAACTTGATGCTTGAAAAAGTGACCTTAACCTTTTGCGACACCCTCTTTACGGCGGGGAGCAGTCACGACAGACGACTTAAGTATGTGATGATATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAATTGTAATTGATTGATTTTATGGGTAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGTTCTTTGAAAATCAGCATGTTAAAGTTAATATGTAACAG # Right flank : ATAGAAAGTTTTCTTCTTCTTTAAACTATCGAGTGTGCTGCTACACAAATAGCTTAGAGCATAATCATTCCTGTTTAGGGAAGGTACTATGCTGTGAATTAGTAAAGAATTGTAAATTTTTTTGATTTACCTCTGTGATGTTTTACTTGTGTAAAATTTATGCATAATATTTACCATAAATGAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCTAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAGTCCCTGTATTGGAATATCCCAATTGCAAATACTACCGTTATCATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGTGGTGGAGGTACACCGCTATTTGCGGCTAATGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10339-11207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000036.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10339 28 100.0 33 ............................ ACAGATCCACGTGTACAAGCTGTCAGCTTTGTT 10400 28 100.0 32 ............................ TAAGCCACTCATTAGGTATAAGCTTATCAGCA 10460 28 100.0 32 ............................ CCCACCGCCCTGCGCACGGCCACCGGGTCGAT 10520 28 100.0 32 ............................ TAGGGGCGTTTGGCTATAATAAAAAAGTGTCA 10580 28 100.0 32 ............................ TATCTACATATGCCCCTTATGAGAGTGATGAC 10640 28 100.0 32 ............................ TTGAAGAGATTACCAGCATCCGCAGCTACGCA 10700 28 100.0 32 ............................ ATCGGCTATGTTAGCAATAGCTTCTATGCAAG 10760 28 100.0 32 ............................ AGTTCGTAGTGATATGGCAATACAATCCTTGT 10820 28 100.0 32 ............................ TATGCGGCACATCAACCTAATCACTATAATAC 10880 28 100.0 32 ............................ TATCGCTCAAGCTGTAAGTGTATATCCTCAAC 10940 28 100.0 32 ............................ ACAAAGTCAGAAATCAGGTGGGTGCAATGTTT 11000 28 100.0 32 ............................ GGTTAAAGTTGAACAAAGTGTTCCTATCTGTT 11060 28 100.0 33 ............................ CTATCCACTGTTTGCTTACGCCCAAATTTGACC 11121 28 100.0 32 ............................ TTAAATCCAACTTCTGGGCTGAATGAAAAATA 11181 27 92.9 0 .....................-C..... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGTCAATACAAGACAAACCAATACCGGGAGTTTTTAGTTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : AAAAAGAGTTTTGCTTTATTGATAGCAGAACTCTTTTTTTCCTTAAAATTTTGTATTAATAATACTTATTGACGTGTGTATCTTAATAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATGTAGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTTTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACGCCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCTAGTGCTGTTATGACAACTCCTGGTAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGCGGTTTCTAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGTTCGGATATTTTCTGACTTAATGCATTTTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 12402-12849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000036.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12402 28 100.0 32 ............................ TTCATCCAGATCTCGGTATTTTAGGATAAAAG 12462 28 100.0 32 ............................ TCCATCACCATACTCAAAGCCATTGTTGATAC 12522 28 100.0 32 ............................ TTCCATGTTAGTGTATCTTTGAATTTTTCATC 12582 28 100.0 32 ............................ ATAGCCGTACAGCAATGTGTTGTTTGAATCGC 12642 28 100.0 32 ............................ TCATCAGGATCTCCCGCATGAATGATTTCATC 12702 28 100.0 32 ............................ AGCTGTCTCAGTTGCATCAGGGATTCCGACTA 12762 28 96.4 32 ...........C................ TTGCAAAACAGGTAGGCGTCTGCATGTTCCAT 12822 28 78.6 0 ...........C.........AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGGTGTAAACCAACGTAGTTGGTTATCGACTAGGAAAGCAGTTTCTGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGTTAGTTTTCCAAAGCATTGCATTAACCAGATATGCGCCCCCCCATTTTTACCCTTTTTTTGCGGTTGCTTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTTATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGTGATGCTTTTGTGCATATTCTTCACTGTTAACCCATTGGTGATCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACTATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACTGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 531-737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000157.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 531 28 100.0 32 ............................ TTTATATTCATTTTCCATCACTTTGATTTCTT 591 28 100.0 32 ............................ ATATCATCGAATTCTTTAATGAGTTGAATCAT 651 28 100.0 32 ............................ TCTGTTAATCAAAGAACCTGTGTTAAATGTCC 711 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAACAGTTATTGGTGAACGGTTATCAATGTTTTATAGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCTGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAGATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGAATAAGATGGAAGATTTCTTGAAACGTAGTCGCTAGCTAAGAAAATTGTGTCAATGGTAACTTAAAAACTTGCGCATTCCCGAACCTAATTTTTAACCCTTTTTTAGCAGTCAATCGTAACTTATTGATTCTGAATTAAATGTTATCTCTTTTGTAAAAAAGGGTCTTTTGGGCTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : TTCTTGAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGGAAATATTGGCCTCATATTGAGGTTGATAAATACTCTATCTCAAGGATGAGGTAGAGTATAAATGGGTTTGAGTTTTAATTGAGGTTTTTCTCGTTTTACATGAAGCTACGCAAGCTTTATCAGATTAAATTTCCCTATAATCCAACTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTTTGCTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTTTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTATAGCCTAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTTAAGTTCAA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4388-4779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJDU010000157.1 Photorhabdus aegyptia strain BKT4.5 Pasy_BKT45_157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4388 28 96.4 32 ..................C......... TGGTACCGGCGATATAGGGGGATTCACTCAAC CTGC [4393] 4452 28 100.0 32 ............................ TGATGCCGGTAACCCGCCGAAATCCAAAGGAT 4512 28 100.0 32 ............................ AAAATGCAAAGCGCAAATACAAGGCATAGCAT 4572 28 100.0 32 ............................ ATACGTGCCAAACTCCATGACCAACCCTCTGC 4632 28 96.4 32 ...........C................ CTGAGTCCGCCTTTACGGAATACTAAAAAATA 4692 28 96.4 32 ...........C................ GGAAGGTAAAACAATTTAGCTTAAGTCTATCA 4752 28 92.9 0 ...A.......C................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGTGGCCGTGGAGTTTTAACTCACCAGGGGGATGCTATCAGAAATATTGAGGGCTCATTTCCTGGGGCAATAGCATCAAACTATCATCTGGCAACAAAAGGGGCTTTTTATGCTAGTGAAACTCTTGGAATGGGTGTAGATGGTAATCCTAAATCAGTGGATCATTTTACCCGGGATGCTGTATACACTGCATATGGTTTTGGGTTCGCCGCATCAAGTGTTGTTCCTGTGGCCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGTTGAATAAAAATACTCTTTTATAGCTAGAATATAGAAGAGAGGCTGTTCTACTTGAATGGAAGAAATTTTGACCCTTTTTTAACGGAAAATTTTAATTTATTGATTTTTAAGTAAATATTATTTACCCCGTAAAAAAGGGTTTTTTATTTTTTTATAATGATTATTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : AGCCAGCACTCTCACTTACCAACTGGTTTTCAGAACTGGCGGCTCAAGTGTGTCGATGAGAACAATGAATGTGTGTTTTATGAAGATAGGGATTCCTGTGACATTCCAGAATACTGTTACTTAGATATTCGTGTCCGGATGTCGGAAGATTCAGTTTGGAATTTAAAACAGAAGGAGTTGCGGGAGGAGGTAGAAGGAATAGGAGGAAAATAGTTTCCAGATATTAAATATAAATGGTTTGGATATATTTCCGATTTTAAGATATTGAATTGCTTATTGCTGCTAATGATATAAAAACAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCCTCTTTCTGCACTAGACTTTAATTTTAATGATTTACAGGCAGATTGTTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTTATTAAGGAGGAAGTACATGAGTCAGAAAAGTGATTTTAAGGCTTTTTCTATTGGCAATAATGCTAATATAATTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //