Array 1 9129-8619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSJK010000010.1 Rahnella variigena isolate 18049_Rahnella_Ancestor, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9128 28 100.0 32 ............................ TTTTGTTAGCGGCAACGTGATGCGGTCATCAT 9068 28 100.0 32 ............................ ATGACTTTGCTGATAAGCGGCTTTATAAATCT 9008 28 100.0 32 ............................ TTAAAACCGCTGCTGAAGATGCGGCAAAACTT 8948 28 100.0 32 ............................ TTTTGCGACTGCTTGCGACCGCGATACCAGCC 8888 28 100.0 32 ............................ GCAGCTTCGGCTCGCTCAGCCCTCTGGCGTTC 8828 28 100.0 32 ............................ TTGCCGCTCGTCTACTAAAGCCACCGGCACCT 8768 28 100.0 32 ............................ CGGCGTAAAATTTCTGGCGCACAGGCATAAGC 8708 28 96.4 32 A........................... TCGAAGACATGTCTCTGCGCAAACAGCTTTGC 8648 27 82.1 0 T........T.......A.....-.C.. | CGC [8626] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAACCTTGCAGAACGATTTCCTGATCCCGCAGGACAAAGTGAATCCGGTGATTTTTGCCGGTGACAAAGCCGGGCAGAACACCAAAGTCCAGTGGCTGAAAGACAAACAGATTAAAATATTTTACGGCGATTCTGACAACGATATCACTGCCGCTCAGGCCGTGAGCGCGAGGGGCATTCGCGTACTGCGCGCCTCTAACTCAAGCTACAAACCATTGCCGCAGGCCGGTGTGTTTGGCGAAGAAGTGATTGTGAATTCGGAGTATTGAGCAACCCCGTCCTTCGCAGTAAAGAAACATGGCACCGTTCGGCTCCCTCCCCTGCGAAGGGGAGGGATGGGGTGGGGTATAAATGGCCTTTCAGAACTGACCCTCTTTTTTGCACCATCTCTAACTCCTTGATTTTACTGAATCACGCGAGCTACACAAAAAAGAGGGTATTTCATCCCATAAAGGGATAATCTTTTGCAGTTCAAAGCGTAAACCTGAAAAACCAACT # Right flank : CTTACTGCAAACCATAAAAACTCCTTGGAAGCAGTATCTCATCTGCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGCCGGGTGTAGGAGCCTGGTTTCTGCCGTAGCACTGCATTGTGTGCTATCGCTTTGTATCACCTTTATAAAACGTTTTTTAACGTATATTGTTCAGGTGACTCAGGCGGGGCAGCCTTCGGGCTGGTCGGAAGGTAGACCGATCTCCTACTCCCGCCTGAGTTACCGCCTGTTGCGTAGGAGCTAGGCGGTAGCAGATATGCAATCTGCCATAGGTCCAGTCAATGAAGACAATAGATACCAACGAAACATCCCCCGATTCATGGACACTCACCGATCGCTGTCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGGCTTTGCATCATGTTGCAAAACGAGCTCGAATACCTTGAAGCGACGTTATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 160-307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSJK010000007.1 Rahnella variigena isolate 18049_Rahnella_Ancestor, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160 28 100.0 32 ............................ AATGCGTTAACTGGCATCGTTACTGGCAGTAT 220 28 100.0 32 ............................ ATCCGGCAGGGTGTGTAAACTTGCCCGGCGAA 280 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGGGGTATTAATGGCATCTCAGTCACAACCCTTTTTTTCGGACTGTCTCTAACTCCTTGATTTTAATGAATCACACGAGCCACACAAAAAAGAGGGTATTTCTGCCAAAACAGGGATAATTTCTTGCAGTTCAAAGCATAAACATTAAAACTCAACAG # Right flank : AGTGGTGGCGATTCAGGCAAGGTTTGCAGATCGGTCCACTGTCTTACAGGCAGCCGCGTGCAACTCACTGCAAACCATAAAAACTCTCTGGAAGCAGTATCTCATCCCAGCATTTTGCCCATTTTCTATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGAACCCTCATGGCGGAAGTTTTAATTTCGCCATCGCTTTGTATTACCAGAAAATAACAATTTATTACCGTATATTGTTTTGGTAACTCGGGCGGGGCAGCTTTAGGGCTGGTCGGAGAGGGTAACCGATATTCCTACCCCCGCCTGAGTTACCACCCAAGAGCGTAGGAACTTAAGTGGTAGCGTGGCACGCAATCTAATATTAGGTTCTGTTCAAATGGATATTACTCTTACAAACGAAACATCCCCCGATTCATGGACGCTCACCGATCGCTGTCGTTTGCTGGCAAATGCGCTGGTGAATCCGCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56851-57481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSJK010000007.1 Rahnella variigena isolate 18049_Rahnella_Ancestor, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56851 28 100.0 32 ............................ TGCCAATCATAAAACGCCGCCTTGCCCTGATT 56911 28 100.0 32 ............................ GAAAAAGCCGAAGGCCCGGGCGGCGACAAAAA 56971 28 100.0 32 ............................ GTGCTTCCCCATTCGTTGAACACGTAGCGAAT 57031 28 100.0 32 ............................ GTGAAATCAAGTGTCCGGTTATCAATTTAATC 57091 28 100.0 32 ............................ AATACCAGCACTAACAACCGCGTCAATTAACA 57151 28 100.0 32 ............................ AGATCACGTACGCGGGCCATCTATGCACCTAC 57211 28 100.0 32 ............................ GTGAGTTGCTGCCCGACGAGCTGAGCAAATGC 57271 28 100.0 33 ............................ TAGCTACGTCCGCGAGTGGCAGAAATGGTTTGA 57332 28 100.0 32 ............................ GCCGAAAAACGAGGAAGAAGCACAGCAGGTAC 57392 28 100.0 32 ............................ AGAGATCAGAGACGACACTCTCACCGTGCGTA 57452 27 92.9 0 .......................-.C.. | GCC [57471] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTACTAAGATTTAAGTCTTTAAAGTCAAGGTCGTGGGCTCGCCGCCCACACAGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTATCGCAGGCACGACGGACATGTTCTTTCACCGCAGCGTGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCTCTCGGTCTTCGAGCCATAGGTCTCGAAGCCGCTTCGTTCAGCAAGATTTTTGATCACGCCATTCCCGATCGAATAAAACCTTCGTTCTGATTCTTTCCCAAAATCCAATGCGGAAGGGTGTTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCCGGGATGGGGTTTTAATGTCATCTCGAAAATAACCTTCTTTTCCACACCTCCGCTAACTCATTGATTTCACGCACTCAATAAACCTCTCAAAAAAAGAGGGTATTTCTCCTCAAACAGGGATAATCTTTTGCACTTCAAAGCGTAACCCTGAAAACCCAACA # Right flank : ACTTACTGCAAACCATAAAAACTCCTTGGAAGCAGTATCTCATCTGCGCGATTTGCCCATTTTTAATGTGTGGGTATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGCTTAGGAACCCGGTAAACTGAAACGCAAAAGAAAATGCGTGTCGCTTCGCCATATCGATTGAAAAGTGGATTTTTTATCACTTTTGTAATATCAATTGGTGGCTCAGACGGGGCAGCCTTAGGGCTGGTCGGTTTCCAGTTTTCCGATTCCTAACCTCGTCTGAGTTACCACCCATGAGCTTAGGAACTCCGGTGGTAACGTAACGCCTCAACTGGAGCCAATGACATGACAACTCACACCAACGAAACATCCCCCGATTCCTGGACACTCACCGATCGCTGTCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGACTTTGCATCATGCTGCAAAACGAGCTTGAATACCTTGAAGCTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 61414-61561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSJK010000007.1 Rahnella variigena isolate 18049_Rahnella_Ancestor, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61414 28 96.4 32 .........................C.. CCGCATCACGCCGGGGCCGTCCTGGAAATGTT 61474 28 100.0 32 ............................ GCTAAAAACGCCGGACTCAACACAGCTTGCAG 61534 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : GACTGGAAGCATCGATTTCTTTGCTGAAAAGATAGGGGGCATGTTCACGGGTTGCGGTAGCTTTTCCCGTGGCGTTGTCGGTGGTGATGGAGACGCCGTGATGCAAGCCGTGGATCTCAATGCTACCCTCACGGCCTGTTATATCGACAGAGCCACGTATTGTCGTGCCGCTGTCATCCTTTAACCATAAATAAGCGGGGATCGCCATTTCATTAGTCCTTAATTGTGTGAAATAGCAGATTAGCTTTTTAAAAAGCAAATAATTGTGTTTAAACCTTCAACTCATTGATTTTCGGAAAGTGAGTACATTGAACCGATAACTCATTAATCTTCAAATTACGCCCGCAAGCTCATATGTTTGCAGCTAACCCTCTTTTTTACCCTATCGCTAACTCATTGATTTTAAATGTCCGAATCATCCATCAAAAAAAGAGGGTATTTTTGCCAAAACAGGGATAACCTCTTGCCATTCGAAGCGTAAACCTGAAAATCCAACAGTT # Right flank : ATACAGCGAAAATCTCATTAAACTTTTGAATTTACGGGAGTATGGGCATAGGCAAAGCCACTTGCGTGACCTCAGAGGGATCATTTAACGAAGAGACTGATTTAGCAACAGAATCTGTCGCAAATTATCTATAACCAGACTGATGCATCCGGGCAGTGACCCCGGACTTGTCTAACTGCGCAAACACCAGGAGTAAACGCCTGGCATTCAATAATGGAGATATATGAAAGCAATAATGACAGTAGACAAACTTGAATTACGCAACATTAAGTCAATACGAGATTCAGGAAAAATAGGACACAACTTCGATCTGGTCGCTAAGTTGAAAGTCCAGTCACGCTCTATGGGAGCATTTTCTGGCGAAGGTATTGATTGTCCAGATTTACAATGGATTGAAACAGTAGATTGGTACAAGTTAGATACTAATGCAGACAAATGGATCCACGTAGGAACCAATCCAAATAATAAAGATTTATACAAAGCAAACCCAAAATCGCAAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //