Array 1 397-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEG01000008.1 Salmonella enterica strain BCW_2239 NODE_8_length_241067_cov_3.01359, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 396 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 335 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 274 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 213 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 152 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 91 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-2068 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEG01000015.1 Salmonella enterica strain BCW_2239 NODE_15_length_128972_cov_2.99917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 47 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 108 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 169 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 230 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 291 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 352 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 413 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 474 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 535 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 596 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 657 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 718 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 779 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 840 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 901 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 962 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 1065 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 1126 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 1187 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 1248 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 1309 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 1370 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 1431 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 1492 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 1553 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 1614 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 1675 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 1736 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1797 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1858 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1919 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1980 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2041 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGTGATCACAGAACTGACCGGGTACACCATACCTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18614-21084 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEG01000015.1 Salmonella enterica strain BCW_2239 NODE_15_length_128972_cov_2.99917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18614 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 18675 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 18736 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 18797 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 18858 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 18919 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 18980 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 19041 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 19102 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 19163 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 19224 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 19285 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 19346 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 19407 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 19468 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 19529 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 19590 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 19651 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 19712 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 19773 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 19834 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 19895 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 19956 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 20017 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 20078 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 20139 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 20200 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 20262 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 20323 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 20384 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 20445 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACTGA 20506 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 20567 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 20628 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 20689 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 20750 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 20811 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 20872 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 20933 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 20994 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 21055 29 100.0 0 ............................. | A [21082] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //