Array 1 41547-42318 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACLR01000069.1 Porphyromonas uenonis 60-3 ctg1118640599487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 41547 33 97.0 33 A................................ GCTGTTTAGCCCTGCCTCGATCTCGTGTAGTTA 41613 33 97.0 34 T................................ CGCGAGCAGTATGTGGAGCTGGTGGACGCAGAGG 41680 33 97.0 34 T................................ TTGCGTGAGAGCGCCATGGCGAGGTAGCGCGGCA 41747 33 100.0 36 ................................. TGCAGATGAGTTTCAACAGATGTTGCAAGAGATTGA 41816 33 100.0 34 ................................. GCCTTGCTGGGGGTCTAGAAGCTTGCTTTCGAGT 41883 33 100.0 33 ................................. ATCCAGCAGCTGGTGAAGAGCCTGGGCTGCGGT 41949 33 100.0 36 ................................. TACTCCTCTCCTTTGTTACTGCAAAGGTAACAAGAA 42018 33 100.0 35 ................................. TCAACAGATGTTGAAAGCGATTGATATGGTGCGGT 42086 33 100.0 34 ................................. GTAAGACTTGAGGTCAAAGACCCCAACACACAAA 42153 33 100.0 33 ................................. TAAGTTCTAAGGGCTAGACCCTAGAGGTCTCAA 42219 33 100.0 34 ................................. ACAGACTACGGCTCTAATAACGGACGCACAATTG 42286 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 99.2 34 GTCGCACCCCACACGGGGTGCGTGAATTGAAAC # Left flank : ATCCAAAGCTGATGTACCTACTTGTCACCTACGATGTGAACACTGCCTCGCCCGACGGGGCTAAGCGACTTCGCCAAGTGGCGAAGATATGCCAAAACTACGGCCAGCGTGTCCAGAACTCGGTCTTTGAGTGCCTCGTCTCTCCTGCCCAAAGAGTGGAGTTGGAGGCTGCTCTCACGGACACGATCAACCTCTCGAGCGACTCGCTACGCATCTACCACCTCGGTACCAACTACCAGTCTAAGATCACCACCATTGGCAAAACAAAAGGCGTAGATCCCGAGGGCGTGCTACTCATTTAGCGGTCCGACTCGTTCGCTCTTGTACACCTCTGCGAATGCCAAGCGATCAGTGAAAAGGCAGTCTATTCGCATACGCTGAGATCCAAGCACATACCGTCTCGCAGTCACCGCCAATGCAACGAATACGTCCGCTCGTAGTCTCCTATTCGCAGTTCATCATCGTCTAATCCTCAACTAATGCGTACCTTTGGGCATCGC # Right flank : ATCTTTAGAGCGAGTAACGTCCAACTCACGACCCGTCGCACCCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACACGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 42-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACLR01000080.1 Porphyromonas uenonis 60-3 ctg1118640599588, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 42 33 100.0 33 ................................. GTATTGTCTCATAGTCTTGTCGTGTCGTTGGTT 108 33 100.0 34 ................................. TATCCCGTACGTGTCAAAGTCTCGTACCTTGGTG 175 33 100.0 35 ................................. CTTTATTGCTGTTTGATATATTTAGTTCCTCGCAC 243 33 100.0 34 ................................. CGTACACACTCGCACTGTCGCACACCCGAGCGCC 310 33 100.0 33 ................................. CGCTACCGCTCTCCTCAGCCAGACGGCGCAGCT 376 33 97.0 35 .........T....................... TCTCTAGGAAGGCTTGTAGCTCTCCGAGTAGATCG 444 33 100.0 33 ................................. TGCGAGATTTACGGCATACCGCCTCGTGTACTC 510 33 100.0 34 ................................. GCTAATCAGCTGGGAGGCACTACGGAGCGCACTT 577 33 100.0 35 ................................. GGGTCGGTCGTGATACCATACCCAGCCCAGTTGTG 645 33 100.0 34 ................................. ACCATAGCTCTCACCAACAGAACCAAGTTCCGAG 712 33 100.0 34 ................................. GCATCAAGCTTAGCCAACCGCTGCTCCACACCTC 779 33 100.0 34 ................................. CAAGTCGACCGCCACAACATATTCTCGGCACACA 846 33 100.0 36 ................................. ACTGACCCCGAGACGGGCAAGATAGACTGCCCCCTA 915 33 100.0 35 ................................. AACAGATACACCCACATAGGCTCCTCATCGTGGGG 983 33 90.9 0 .........................G...G..G | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.2 34 GTCGCACCCCACACGGGGTGCGTGAATTGAAAC # Left flank : TTGAAACCTCGCACGTGTAATGTCTCCGCTCCGATTTCTCCG # Right flank : GAGGAGAGCGATTGGCAGTCGGCACGAATACGATGACAGCCTCCATGAGCAGATACGTTTGTGGGGGGCTGTCTCTGTTTTTACGAGCTAAGATTGCTACGCAGCGTCAGATGAGGGCGCGGCGGCGGCCGGTGGCGTAGAGGAAGGCGATCTCGATGAGCCCCGAGAGGATGACGATGACGACGAAGGCGATCAACTTCACCTGTAGGAGCACGGCGATCAAGGCACAAGCGCGATGACCGCAAGCGAGAGGAGTTGGTTGATGAAGACCTCACGGTTACGACCGTTGGCGGTGAGAACCAGTTCGATGAAGAAGCCCGAGATAAGCCATATCGGTATCAGTGCCGTCATGAGCAGGAATACAGGTAGTATGAGATCCTCTATCGGGCCATTGCCCATGATCCATATGATCGGCTTAGCGGCGAGCATGAGCGCCCCCATGCAGGCGATGCCCATGAGCAGTTCGCCACGCAGTATACGATGTATGCGCTCTGTCGTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACACGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37-677 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACLR01000155.1 Porphyromonas uenonis 60-3 deg1118640599603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 37 33 100.0 34 ................................. CTGTGAGAGAATGGTTTGTGAGAGTATGTAGTAA 104 33 100.0 34 ................................. AATTCTGAGAACTGACAGAATCCGTTCTTAGGCT C [109] 172 33 100.0 34 ................................. CTTCAGTGTGTTTAGTCCATCTCGTGTCATAGTC 239 33 100.0 35 ................................. ATATTCGTTATCTAGTTAATAGTGATTAACTTATT 307 33 100.0 33 ................................. AAGGTACTCAGATGGGTGTAAATCACCACGAGA 373 33 100.0 34 ................................. TTAAATCTTAGTGCCTGCCCCAGCTTGTAGTGGG 440 33 100.0 36 ................................. TCTATCTTTGCAGTGTTCAAACCCCCGAGAGCGGGA G [454] 510 33 100.0 35 ................................. TCACCGGCGAGACCTTAGCAAGCAAATTATCCACA 578 33 100.0 34 ................................. CGCACATCAAGCTTAGATATATCGGGAGTATCCG 645 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 100.0 34 GTCGCACCCCACACGGGGTGCGTGAATTGAAAC # Left flank : AAACTCCGAGGCAAGGCGGGCATTACGCGCTGCATGG # Right flank : ACCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACACGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //