Array 1 13218-14045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000040.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_40_length_41240_cov_155.445108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13218 32 100.0 33 ................................ ATGCAGAATCCTTTGAATACATGTTTAACGCCA 13283 32 100.0 36 ................................ TAACTCATTTTTAACCAATGTACGCAACCTATCCAA 13351 32 100.0 33 ................................ CTCACAATTAGTTTATTATATGTTAGCTAATAT 13416 32 100.0 35 ................................ ACTCACGATCCAACCACGTTAATTAGTAGCGTTGT 13483 32 100.0 34 ................................ ATTGTTTTGAGCGTAGCGAAAAACTAGTTCTTTC 13549 32 100.0 34 ................................ CTACTAATAATCTTTTCAATACCATCTTTACTTG 13615 32 100.0 35 ................................ TTATTTGGATCTTTTGCCGTTGTCCACAACAACCC 13682 32 100.0 34 ................................ TCGTGTTCCAATATAAAGGATTTCTGTTGTCGTC 13748 32 100.0 35 ................................ TACGGGAGTAGATGAGTTTACCTATGCCCCATTAG 13815 32 100.0 32 ................................ CGTTTGTAAAACGAGGGGAAACGGAAGGCGCT 13879 32 81.2 36 ....TCG.ACC..................... TTGTCAATTTAGGTATTGCTATGGCTCCGTTAGGGG 13947 32 100.0 35 ................................ ATTTGAGCGACATATTCTGCGTAGGCTCGTTCGTC 14014 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 98.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CGAACAAGGAAAAAACGAACCATCTATTGAAACTATCAGAACACTAGCAAAGCTGTTCGACGTCTCCACAGATTATTTACTAGGTCTGATTGATCAACCCAAACACCCCATAAATTTTACTATAAAAGATGATTTCACATTAACGGAGTCAGAATTGCAAACCGTCAAACAAATGAAAGAGCAACAACTACTAAGTGAATTAAGTGAGAATCCTGTTGAAAATGTGGAAAAACTGACGAAGCTTTGGAAATTTATTAATGAGTTGTAGGGATCGGTGCGAGGTTACAGAGTTTAAAACTAACTATTTGGTTAAAATTATTTGATTGTTTTGGTGCGAACCTGAAGTGCACATAAAAACACAGGGGGATTCGCACCATTATTTCATTGTTTTTTGTTAATATTTGGAATAAAATATATGGTATTAACATTGGTTTATAATATTTTTCTTTTTAATGGGTCATTTTTTAATGTTTTTTGTAAACTTTTAGGAAAAAATCGCT # Right flank : TGCGTCAACATTAATTTCACTCATATCGTTAACAATAATGGCTATTTTTAACCCTTTCTGATTTTCAAGAAGATGATTGAGCAGAGATGTTTTACCTGCTCCCAAAAAACCACTTAAAACGGTTACTGGTATTTTTTTACTCATTGATCTTCCCTCCTCTATCATGATCCATATATGCCCGACTAGGTGTAGCGCCTTCTTGAAATAAATACTTTCCACTATACCCTTCTGTAGCTTGATCAACTTGCACTATTACCAGTTGGCAAACTCGCATACCAACCTTCAATTGAACAGGGACTCGATTTGCATTAAATAATTCCAAAGTGATCTGCCCAGAGAAGCCCGGATCGATCCATCCAGTATTTTGAATAAAGACACCAAATCTGCCGATAGAACTTCTCCCTTCAACAAAGGCTGTTAAATCGTTTGGTAAACGAATTTGCTCTAATGTTGTTCCTAACATAAACGTGTTAGGCGGAATCGTGACGACTTTCTCATCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33905-34271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000040.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_40_length_41240_cov_155.445108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33905 32 100.0 35 ................................ CTAAATCAGATAGGATTGTTGTTAGGTTTTTACCT 33972 32 100.0 35 ................................ TCGTACTGGTGTATGTTTAGACGACTGATATGCGC 34039 32 100.0 36 ................................ GCAAACGAAAACCTCTATGATTATTTAAAACCATTT 34107 32 100.0 35 ................................ TAGTTGTGCACGTACCATTTCGGCAATGCTTGCAT 34174 32 100.0 34 ................................ ATCTGTAAAACGGAGCTGCCTTTTGCTGCCTCTT 34240 32 90.6 0 .......................A..A....C | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 98.4 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTCCTTAATTTATCTACTTTTAACTTAATCATTTATTTTTTCGATAAATATAGCGGTATTTTGCTTAAGTTTGTCGTTTATACTGCTGGAGTAATTTAATTTTACTTTTCAATTTACAGATCACCCTGTGAATGAAATTGAAACACCAATTATGCATTTTGATACTAATTGTCGAAATAATTTAATCTACAAAGAGGAAAACATCATTTTTTGATTTTATTTGCACATATTTTAAGATTCTTCCACTTGTACGATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATTTTGTTTTTGGTAAATAATTGGGGGAAAATGAAGAGAAATGGTTCATTTTTTTACTTTTCTTCTCTAAAACAGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGCA # Right flank : CGCACTTATTGTTTAGCAGACCCTTGCAAATCGAGTAGAGGGAAAAGCTAGATAACTTTTCTCCCCTCTCACACCACCAGTATATACGGTTCCGTATACGGCGGTTTCATTTGGGATCAGTTTAAGCACTCTTGGGTCTTTGATCTTCTGACTCAATGTGCGCATTAATCTGTCGTGATGTACTTTATCGAAGAACTTCTCTAAATCCATATCGATAACCCAACGATAGCCATCTTTTATATAGCTTCTCGCTTTCCTGACCGCGTCATGTCCTCGTCTATTCGGGCGGAAACTATAACTGTGTTCAGAGAATGTTGGGTCATAGATGGTTGTTAGAACTTGTGCGATTGCTTGTTGGAGGAATCGGTCTAACACGGTAGGAATTCCTAGCTTCCTCATTCCGCCGTTTGGTTTCGGGATTTCGACACGACGAACGAGTTGAGGATAGTAGGTACCTCCTTCGAGTTGTCCTCGAATGGAAGCCCAGTGTTCCATGATAT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34612-35243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000043.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_43_length_35410_cov_148.186823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34612 32 100.0 36 ................................ TATTTTTTCAACTTTATTATCATACGAACCATTAAC 34680 32 100.0 36 ................................ TAGGAAATGATGGCATGTCTGGTAAAAAATTGTGAT 34748 32 100.0 34 ................................ CGTTAGAATAGCATCCATTTTTGATGCGCGTAAA 34814 32 100.0 34 ................................ CCAGTAAGGTAACTATAAGAAATTTATCTACTGG 34880 32 100.0 34 ................................ GGTTTTTATATTTACAACTATTAAGACATGAGTA 34946 32 100.0 34 ................................ TCTCATGCGCAGTTGTACTTGATAGTCTAATTCG 35012 32 100.0 35 ................................ AATCTTTTCGCGTGGAGCTGTTTCATCGAAAACAA 35079 32 100.0 35 ................................ CGTTGGCTGCTAAAGTTCTTACGAATGTTAATGAT 35146 32 100.0 34 ................................ CCGGTTCTGCCTAAATTACCTAGCATAGATCGAA 35212 32 96.9 0 .................C.............. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.7 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : GCCCTTTTCCTGTAAGAGCTGGTTATCATCAAGGAATCTTTGAATATACAAAACCATTTCATTAAGCGTTTCTACAAAAATAAAGACAGCATCATGATTTTTGGAAAGCGTGGTCTGTTGCTCAGTAAAAATGTCATAATCTGTTGGTTGGTTAATGATAGCCATATTTGTATATTTTTGCAGGTTTAATTTATCTATGATGGACAATTGGTTACACTCCTTTTTATACCTTGTTTCTTATAGGTGTGATTTAATAAACCACTTATTTTAACTTTATGTTATTATTTACAGAAAGACAAACCTTTATTTTTCATATTAAATTAAAACGTTGGTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTCTTTGTATTTTTCAATAATTTGACATAAAATAGAAGTTATAATCGTATTTTTAGAATAATAAACGGAATAAGGCATATAAAAAATAGTTTTTCTGTAAATATTTAGGTGTAAATCACT # Right flank : GATTCCTGCCTACCGGCGAGGGAGCCCCCTCAAAGTCGCACCCTGTATAGGTGCTTTTTCGCTGACATCGCACCTTATATATAAGCGCCGCAATCGAGTAGAGGGAAAAGCTAAATAACTTTTCGCCCCTCTCACACCACCGTACGTACGGTTCCGTATACGGCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43541-44367 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000016.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_16_length_115924_cov_137.189595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43541 36 100.0 30 .................................... GAGGAAAGTTCTTCTTCAAGTATTTCCTCG 43607 36 100.0 30 .................................... AAGCTGACCCTGCGCGTTAGCGCAGAAGCT 43673 36 100.0 30 .................................... TCGAAGCCTATCAACTCTAAGGCTTCGTCA 43739 36 100.0 30 .................................... CGCGGTATCGCTATTTAAATAATCATTCTG 43805 36 100.0 30 .................................... GAGATCTTAGCGAAAGTATGTCGCAAAGTA 43871 36 100.0 30 .................................... CGAAAATGCTGACAAAAAAGAGACGGACAA 43937 36 100.0 30 .................................... TTGGTCATAACATTATTATCTTTTGCTTTA 44003 36 100.0 30 .................................... TGACGCGGACATGCCCACGCTATATTTCTA 44069 36 100.0 30 .................................... TACCACTTCGCAAACAAAAAAAGACTTTTA 44135 36 100.0 30 .................................... TGGTTTAACGAATGAGGTTCCGATTGATGC 44201 36 100.0 29 .................................... TTGATCTCTAAAGCTAACTACCTTTTCAC 44266 36 100.0 30 .................................... ACTTTCGCTTCATCTCTATCGATATAGTTA 44332 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Left flank : TGAACTTACTAATTTAAATAGACATCGCTATGAGTAGATTTATGAGAATAATTGTCTTTTTTGATCTGCCGGTTGTTCTTAAAAAGGAAAGAAAAGCATATTCGCAGTTTCGAAAATTCTTATTAAATGATGGATATGTTATGTTGCAGTATTCAGTTTATTCTAGAATTTGCAATGGTGAAGATGGAGTAAGAAAGCATATGAAAAGATTGCGTGAAAATCTTCCTCCAGTAAATGGTGCGATCCGTGCTATGAAAATTACCGAGAAACAATTTGAAAATATGGAGATTTTATTAGGTACAACAGTTGTAGAAGAAGAATTAGGAGCAAAAAAAATAGATTTCTTTTAAAAAAGTGCTTGCAAATTAATTTGCAAGCACTTTTCAGCCTTTATTTCATAAAAATTTAATGAAAAAAAGATAAATATGTGAATAAATAGGATTGTTTTTAAAAATACAAAACCCTTGAAACGGGAAGCATCAAGGGTTTTAGAGCCATGT # Right flank : CTGGTTTCCTTAACAATCTTTTGCTGTTTCATCATATCACATTAGAAATAAAACATCTTTAGTAAATAATAAAAGGTTGACAAAAACTAAATTGTCTGTTTGGTATATTAATGTGTATAATTTTAATAGTATTCAAGAAGTGACCTCTTTACCAGGGCAACATACATTTATGATAGAGTTCCACTTTTTTTCGCTAGGATTTTGAAGAAATATCCCCGAGAACTATTTTATACATACTAATAAAAGTTAAAAGTACTGTAATCAAATTATTAAATGGATACCAGCAATGCCAGAAAATAAACATGTTAAACAGCCAAAAAATATTGAATCTAAGTCAATCAATGAAATTTCAAAACGAACAGCTTTTAATCAAGTAACTATTAGGAGGTTTAGGATTCAAATATAATCTGAAATAGTGTTTATTATGCTATACTACTTGTAACAAAAGAGAGCTCAGCATATACATACAATAAAGGGTGTGAAGTTCATATGCGGGAACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAGGATTCATAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 25563-25199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000012.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_12_length_147036_cov_156.332290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 25562 32 100.0 35 ................................ TTTATACCTAGATAAAAAATCATATGATAAAATAC 25495 32 100.0 34 ................................ GCACCAAACACCGCCAAGTCAACGTCCAGATGAT 25429 32 100.0 34 ................................ AGCGTTAGATCAGTTTAATTCTGATTATGGGTCC 25363 32 100.0 34 ................................ ATAGTCGATATTTTCGAATTCCCTTGCTATGTTT 25297 32 100.0 35 ................................ CTTTTGAACATCAACAATAGGCAGGTAACCATTGC 25230 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : CTGGTTCATTGCTAGTATCCTCCTATAAATATCTTCTTTTTCTAACAACTTCAGTTTACACGGTATTAATCGACAAATTAATACCGCTTTTTTCATTCCATGATGAAAATAACCGTATTAATTCACTGTTTTATTTTAGGTTATATAATGTTGCTTGGAAGAAATCATTTGCTGTAAAAGCTAAATGTTTTACCATTGAATGAAAGTTAAATCGTTTTCAAATATATCACCGAGATCTTAATAAAATTCTATTACACCTTAAATGACTAATTATGAATTATGCCTTATAATGAATACAGAATTATTAATGCCATTTCAGTTGATTTTTTTGGTGCGAACCCCAAGCGCACATAAAAACCCCGGGGGATTCGCACCAAAATTCACTTGTTTTTGTGGTAATATATGTAATATAATTCAACACAATTAGCATTATTTACGATTTCCAAGCTAAAAATATGCTGTTTTTTGATTGTTTTTGTTATTTTTAGGAAGAAATCGCA # Right flank : GCCGTATTTTTAAACTTTTTATAGTCCGTTTTAGTCGCACCTTATATAGATACAACAAGCTCAGAAAAAATGAAATCGCTCGCACACACCCTATTGCTACCAAATCTCTAAAAGACATGAACCAAATAACCTAACGGAGGCGCGTATGTTTATTTATATCCTTATATCTTTAAGTATCATTATCCTAACCGTCATAATTAGCGTTCTTTGGCTAATTTCATGGTCAAAAAAGCCTGATGCAGATTACGTTTTAAAATTTATAGCTAAAAATCCGCAAAGATCTTCCTTAATAATTATAAAGAACGGAAAATCGCTCGCAAACGTTAACGCGAATGAACGAAAACCATTAGCTAGCACGGTAAAAATCATGATTGCCATTGAATTTTCCCAACAAGCGGCTAATGGTAGCATAAACCCAGACGAAAAAGTTCATCTTGATGATCTCGCTCGTTTTTACGTATCTCACACTGATGGAGGCGCGCATGAAAAATGGTTAATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 33261-33029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000012.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_12_length_147036_cov_156.332290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 33260 32 100.0 34 ................................ TGCTAATTGCCTTTGATTGGCTGTACTTGCAAGA 33194 32 100.0 35 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAAAA 33127 32 100.0 35 ................................ GTCTGGTGCGTGTATTCTTGCACCAACGTATAGTC 33060 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TTATTTATGTGTAAAGGCACCTCAATCCCTCCCACTAGTCATCATTATATCTCAGTTAAAAAGGCTTAGACAGACATACTTTTTCCATTATAAAGTGGAAGAGTGTTATTGAAAGATGATGCTTAAACCGTTGTTTGCTAACTTAATTATCACGTTTTTATTTAGATTTTCTCCAATGTTTAGCGCTCATTGACAATTGAATCTAACTTCATTGCAACTAGTTTGGACAAATAATAATTTTATTCCTTTTGTTGATTTCATCATAGTTAAGTGATCTTTATTTTAAACTATCGTATAATAGAGATACAAAATTAACATGAGCTTATTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTCAACTATTTTTATGGGAATTTATGGAGTTAAAACAACGACTATTTAAGCATTATTATTGATTTTCTCTTTAAAACAACCACTTTTATACGACTTTTGTAAATTTTTAGGGAGAAATCGCT # Right flank : TCATCAATATCGGTTGCTTGTACAGTTATCTTTTTGTTGGATAGGTTACACTTGACTAGACAAAAAAATTAAGGTGAAGTAGACTAGACGGAATATAATAATGGTTCATGATAAAAAAGGAAATTAATCATACAAAGTGTCTTTACCCGGAGAAGCAGGCATGGTACCCTGCTTCAAATACTATTTCTTCTATTTAACATCCAAACTTTTTAACTCACCACATAGTATGGACAAAAAGGATAAGGCTAGAAGCGGATATCGTCTAAAGACGGAGGAATTAGACCACTCGTTTGTAAGTTAAATCAATCAATTTTTAGTTCACATTACATCACAATCTATATCGTAATTATTATAAACATTAATTTAAAATGGTTAACAGCAAGTAAATTCTTGATCTTTTTATTAATCATAATCATGTAATATTGACCGTTAACCCCGCTTTTGCACGCTTCAATCATTTTGCTATAGTTCACGCAATATAGCCGTTTTCCATAGCAAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 39727-39032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000012.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_12_length_147036_cov_156.332290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 39726 32 100.0 35 ................................ GCGTAATAATCGTGGATATTTCTCTGTAGGTATTT 39659 32 100.0 34 ................................ TCTTTTTTTATACGGAAATATTACCTATACAATA 39593 32 100.0 36 ................................ TTTTTGTTTACTTATTTTAACATCAGCGTGTACGTT 39525 32 100.0 34 ................................ AATATCTATGCAAGCCAAAATTAATACAATACTT 39459 32 100.0 35 ................................ TCGATCGGGAGGTCAACGTGCCATCCTCTAGCCTT 39392 32 100.0 33 ................................ TTCGAGGAGACAGTAAGCGATATGCTGAAACAA 39327 32 100.0 35 ................................ GGCAACGAGATGCTTTAATTGCCCTGTTTCTGGGT 39260 32 100.0 34 ................................ CAGACCCGCCCGTCTGGTCAAATCTAAATCTTAT 39194 32 100.0 33 ................................ TATTGCTGGTTTTGATGTTGTTTATACTATTAA 39129 32 100.0 34 ................................ AGTAACGTGGACTATGGCAAAGCTGTTGTAAAAG 39063 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 100.0 34 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ATACAATTATATTGAAAATAAAGGATACACCATTGACAAGAGGTACGGTGAATTAATACCAATTCTTCCTAATGAAGAGCTAAAAAAAATCCTGCAATTGCAGGATAATCAACCATTGCTATTTTTAAAAGCCTTTACAGTGTTTGAAGATGGGAAGCCCTTTGAGTATTCTAAAGTATATTACCACCCGAAAAAATACTCCTTTAAATTCATCTCAGAAAAGAACCATTAACTAGGTAGTGATTCTTTTGTTGATTTTATCATAGTTAAGTGATCTTTATTTTAAACTGTCGTATAATAGAGGTGCATAATTAAAATTAGCTTATTTTTAGTGCGAACCTGAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCTATTTAACCACTTTATGGGAATTTATGGAATTAAAATAACGATTATTTAAGCATTATTATTGATTTTCTCTTTAAAATAAGCATTTTTATACGACTTTTGTAAATTTTTAGGAAGAAATCGCA # Right flank : TTTAGCAGCAGAGTTTCGAAGGCTAAGTATAGGTGTGTGATTGGAAGAAAAAGAATCAACTGCTTTATCAAATAGTGGTAACACGGAAATAATCTAACCATGCCAATAAAGTGAATCTTCAATCAGTGGAGGTTTACATTCGTTCCCCCACTGATTGTTAGTATGGTATGACCTAAAGGCCTCTGCACAAATCGAGTATTTAGGTGCTGCTGTTATCTCCCACAGATTATCCAACTCCTGAAGTGGGAGTTAAAGCACCTTATGTACAGGATAAAAACAGAACTCTGTAAAACACTCAAAACATTAAGCGTTTAACATGTGATTCACCGAAAACTTTAATTTTTCTAACCCATCATATAATTTCTCTTTTGGACAACCTATATTCATTCTTAGAAATTTTTCAGTTTCTCCGTATACTTCACCAGACATAATACCTACCTTCCCTACATGAACCAAATAATCTTGAATCTTCTTATTACTTGCGTTTAGTTTGCTAGCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 146793-146093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000012.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_12_length_147036_cov_156.332290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 146792 32 100.0 34 ................................ CATTCTTGAAGTGCGATCACCAGTTTCAAAGATC C [146779] 146725 32 100.0 35 ................................ TTCCTTTGCATCAGATACGTATATCTCGCATTGTT C [146711] 146657 32 100.0 35 ................................ ACTTAAAAAGTTTGCTATGTTCCAACTGTCATAAC C [146643] 146589 32 100.0 34 ................................ AAAGAAGAACAGGAAAAAGAAACAGGAAACTATA C [146575] 146522 32 100.0 35 ................................ GCGTAGGCTGTATGAAAATATGGTGTTCGTCCATC C [146508] 146454 32 100.0 35 ................................ CGCTCCTTCGATTAAGGCTTTGTCGCTTATGCGCT 146387 32 100.0 33 ................................ CTGCCATTCTTTTTTTATTTTGTCTCTTGCTTC 146322 32 100.0 35 ................................ ATCAAATGACTGGCACAAAAAACGTATTGCTTGGT 146255 32 100.0 34 ................................ CGTGTTGGACTGTATACTTGTTGCTTGGTCAATT 146189 32 96.9 33 ...................T............ CATCACATCGTTATAACCAACTTCGTAATTCCC 146124 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTGATTTTCGTTAATAAATGACAAACCATCTGCACTATCATATAATAATTGTATAAAAGCTAGAGTATTAAACTTGTTGCGAACCTGAAGTGCACATAAAAACCCTAGGGGATTCGCACCATTATTTATATTATTTTTGGCAAATATTGGAAAAACGAAGAGAAAACGTTCATTTTTTTAACTTTCCCTCTCTAAAACTGGAAGTTTTTTGTTATATTTGTAAAATTTTATGTTAAAATCGC # Right flank : GTCGCACTTATCGTTTAGTAAATCCTTGCAAATAAAATACAGCACCTCATTTTAAAAAGAGGCGCTGTTAAACTGAAACAGGTATTCAGTTAAATTTCGTAAAATCACCCGCTAGAAAATATCTGGGGAAACGTCAAAATCTAAAACACAATATAGCCTAATATATTTGTACTTATCCTTACTATTATTCACTAGCTAACTCCCCCATACTCCTTACCTGAAATCCGGTTTAAATTCTCCAGTAACTGTTTGATGCCCATTGTTGCGCTCGTACTGTTCTACCCTTTCTAGTTCAAAGCGATCCATGATAGGAATGTCATTAACTGAAAATAGGTAGGAATCCTCTGCTGGTACATGCTCATACCATGCCCAATTTGGCACAACAAAATAGTCGCCTGCTTTCCAATCGAATCGCACACCATTTATAATGGTATAACCCGATCCTTTGTAAGCATGATAAATAGTAGAATGGGTATGACGCAGTGATTTTGTATTAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38660-39020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYK010000007.1 Virgibacillus pantothenticus strain 179-E 7A2 HS NODE_7_length_170306_cov_172.778469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 38660 32 100.0 34 ................................ ACTGGTATCAATACAACACGAACTATCGAGTCAG 38726 32 100.0 33 ................................ AAAAGAATACGTGGGATTGCCAAAAGGAATGTT 38791 32 100.0 35 ................................ CATGCAAGGTGAGCCTGATGCTTTTTCGGACGAGG 38858 32 100.0 33 ................................ TACGCCTGTCGTCACATGCTTCTCTTGGTTCAG 38923 32 100.0 34 ................................ CACTTAAAGCTAATGAGTGTTTTCCATCAAATTG 38989 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGCGAAAAAAATGTTAGTACTAGTTACATATGATGTCAACACATCAAGTAATGGTGGCCGAAAGCGGTTACGTAAAGTGTCGAAAGTATGTCAAAATTATGGGCAGAGAGTGCAGAATTCAGTTTTTGAATGTATTGTAGACGATGCACAGTTCGCTGCTTTAAAAATTCAGCTAACAGGATTAATAGATGAGGAAAAGGATAGCTTACGCTTTTACCGATTAGGAAATAACTACAAAACAAAAGTAGAACATATTGGTACAAAGGAAGCAATTAACTTAGAGGATCCCTTAATTTTTTAGTGCGAACCCCAAGTGCACATGAATTTCCCGGGGGATTCGCACCTTTTAAATGGAATAATATAGGTGGTTTTTTAGGAGGGCTTGCTAATTCAAATTTAAAATGACTTTATTTTTGCCCATAGATTTCGCAAAAATCCATAAAATAGGAGTTTATGAGCAAAAATCGCA # Right flank : TTTCAGATTTTGTAACCATAAATCAGGCTAGGAGAATGGTTAGCCTGATTTACATTTGATATTTTTTCTAATGCCTTTATATTTTCTGATTGGCATACTTCCAACCCCTAGGAATAAGGCCATTTTTCTTTTAGCATGTCCATAAATATTGCTACATTTTGTTTACTTTTCATAATAGGTGAGTAAACGCAGGAAAACATTCGTTTGAAATGGATGTCCTTGAGCTGTAATGTGGTGAGCTGCTCTAATTGCACATCTCGTTCTATAACACTATGAGACAATAATGACAGTCCCATTCCCTTAATCACGCTTTCTTTTACTCCCTGATTGCTACTGATCGTGAGAAATGATTTAACTTGTAATCCGTTGGAACGAATCACATGCTCTAAATATTCTCGGGTCCCAGACCCCTCCTCACGGGAAATCCATGATTGATTTTGCAAATCTGAAGTGGTTATCTCTTCTTTTTGAGATAGTTCATGGGAAACAGGTGCAACTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //