Array 1 114599-115527 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVW01000006.1 Pseudomonas cichorii strain NB15027 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 114599 28 100.0 32 ............................ ATCAGGTATACCATGACCTAATCAGCAGCGGC 114659 28 100.0 32 ............................ TTGAGGGCCTGAACTGCATCGATGCTGCAAAC 114719 28 100.0 32 ............................ GTCAAGTCTGCTTTCAAGGACGTCGATGGGCG 114779 28 100.0 32 ............................ GAACTGAACACGGCTTCTCAATTGAGTGAAGG 114839 28 100.0 32 ............................ GGGCTGAAGGCATTCAATCAACATACCTTTAA 114899 28 100.0 32 ............................ GTTACGCTCTTCAACTGCGGTGGCATCGGTGA 114959 28 100.0 32 ............................ GACATCGCAGTCAAGAACGCTGCCTTCAAGCC 115019 28 100.0 33 ............................ ATACCCGGCTTGAATCAGTGTGGGGCTGATCAG 115080 28 100.0 32 ............................ CGAGCGCCTGGCTCAGCGCCAAGGCTTCACCG 115140 28 100.0 32 ............................ GGAACCCGAAACGAGAACAGCGGTAGCCTTAC 115200 28 100.0 32 ............................ GACGTGATCGAGGCAGCGTCTGCACTCTCGGC 115260 28 100.0 32 ............................ CGGTTGCGGCACCAGTCATCAGCCCACCAGCT 115320 28 100.0 32 ............................ CGATGTTGCAGCACGTAGCCCGGAAAATCGTA 115380 28 96.4 32 C........................... GCAAAAGCGCCGCCGCCTGATGAACAACGTCA 115440 28 92.9 32 C.................C......... ATCTTCAAAGTCCATGCCGTAGGCGCAGTTGG 115500 28 89.3 0 C....................C..A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.7 32 TTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGTTGGTCAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGAGCGGGGAGAGGAGCGGATTTATCCGCGAGACGTCATTGAGGCAAATGCATTTTGTACGACGAAAGGCTCATCCCGCACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTTACACGGGATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGACAACATCAGAAAGCATGTCGATGCCCCACAGCTTGCGAACATCCATCCAATGGCCAGAAATGACCCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCACGATAAAAAAAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AAACCAAAGCCCTTGTAGTCCCACCTCACCTACAAGGGCTTCAGTCCATCGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAACCCGTAGCTGTTGAATGTCCCTTCCTGGGCGCTGCTCTGTATCGGTCCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTGCGCATCTGGACAAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCCGTGAGGCCGTGCCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACGCGGTTGACGCGCCGATGTTGCGCATCAGTAGGCACCGGGCTCAGTTCGCCTACTCGCACATGATCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGAGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCGATAACCTTGCCGCCAATCGCGGGAAAGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 124836-124206 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVW01000006.1 Pseudomonas cichorii strain NB15027 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124835 28 100.0 32 ............................ ACGAGCGCGGCAAGAGCTGCAAGAAGCATTGC 124775 28 100.0 32 ............................ TCTTACTGGATGCAGAGACAGCGGAGCAAAAC 124715 28 100.0 32 ............................ GGACTGAAACGGCAAACGCCGGACAACACTGA 124655 28 100.0 32 ............................ AACAGCCCCGGCAACAGCAGCACGCCCGGTTG 124595 28 100.0 33 ............................ GGCCGCAACGCCAACAGCCTCGCCCGCAATCAG 124534 28 100.0 32 ............................ AGACCTGCTCGTGCGGGCTGCGCAGCGACTTG 124474 28 100.0 33 ............................ CCGGCCCGCGCCCGTACTACCTGATTGTTCCGA 124413 28 100.0 32 ............................ GTGACAGTTCTGAGGGCGTATCAAGCGAAGGG 124353 28 100.0 32 ............................ ACATGTACAGCCCGCTGGCCGGTATCGACGAG 124293 28 92.9 32 ...........C...A............ TACGACCCGGTCATTAATGGTCATCTGCTCTG 124233 28 82.1 0 ..CA.......A.C..........T... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TACCAACGGCGGTCGGCAGGTTGAGGATGTTTTTCTGAGCTGCCTACACGGCAGTTAAGTAGACACTCTGCTAGATAACCTTCCGTTTTCAAAGAAAAATCCGCACCAGTAGCTGTTTTACCCCTTTTTTTACCGAGTTTTATAAGTCATTGATTTTTAAAGAATGAATCTGAGGTGAAAAAAAGAGGGTCAAGAAAGGGTTCATTCCTGGCCCACTTCTGTATGAGCAATGTCGCGGCCAAGGCCCCTCCCACAAGATGAACTGCCTTCGATACCGAGTCGGACTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGATTCTCACAGTGCAGCCCATTGCTGATCCTGACCCTCTTTTTTTCGCCCACCATGCACCCTTTTAAAATCAACCACTTACAGAACCGACGAAAAAAAGGGATAGAACGACCGCAAACGCATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : ATAATCAATCCAACCGCCCAACAACCCCACAAGCAATTGATTCAAATAGACTTTAACCCCCCCCTGCAGGAGCGCGCTTGCCCGCGACAACCATTCTGTAATCCCCTCCTTACAAGAACCGCAGACCGATCTTTCTGACTAGCCACCACCCACACCCTCAAAAAACATAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCTTTCTCCGGCCAAGTGCCATCACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCCAAGCGCGCGAATATTTATTACCTGCAGCATTGCCGGGTATTGGTAAATGGTGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACCGGTACTTCAGTGACTCAGGCGGCGATGCGGGAGCTGGCCAAGGCAGGCGTGCTGGTCGGTTTTTGCGGCGGTGGCGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 125277-125702 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVW01000006.1 Pseudomonas cichorii strain NB15027 sequence06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================== ================== 125277 28 100.0 32 ............................ AACATCCTCAACCTGCCGACCGCCGTTGGTAA 125337 28 100.0 32 ............................ ATCTTGCGACATTGAGAAGATGGAGCGGTTGA 125397 28 100.0 32 ............................ CACAGAATAGCCCTGGAGGCATTTCATGAACG 125457 28 100.0 70 ............................ TGTACGACCGGCGCGGTGTCACGATCAACCGCCTTAAATGCGGGAGTCGATGGCAATCACGGTGCTCTCC 125555 28 92.9 32 ...C.T...................... AAGTACTCGACGCATAAGGCGAACAAGGTTGC 125615 28 92.9 32 ...C........A............... ATCAGCTCGCCGTGAGACATTTCCTGGCTGAA 125675 28 89.3 0 ...C........A........C...... | ========== ====== ====== ====== ============================ ====================================================================== ================== 7 28 96.4 38 CTTAACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CAATGCTTCTTGCAGCTCTTGCCGCGCTCGTTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGCGTTTGCGGTCGTTCTATCCCTTTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAAAAGGGTGCATGGTGGGCGAAAAAAAGAGGGTCAGGATCAGCAATGGGCTGCACTGTGAGAATCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGTCCGACTCGGTATCGAAGGCAGTTCATCTTGTGGGAGGGGCCTTGGCCGCGACATTGCTCATACAGAAGTGGGCCAGGAATGAACCCTTTCTTGACCCTCTTTTTTTCACCTCAGATTCATTCTTTAAAAATCAATGACTTATAAAACTCGGTAAAAAAAGGGGTAAAACAGCTACTGGTGCGGATTTTTCTTTGAAAACGGAAGGTTATCTAGCAGAGTGTCTA # Right flank : AAGCTGATACCGCACTGGATTGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATGGATATCTATCGCTTGAAGCACGTCTTCGCGACTGAAGTTGCTCCTACACAAGCCAACTCATTCGCAAAGGCATTCAAACCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGGGCGATAACACTCGTCCATATCCCCTTGTTTGCCCATAAGCCCGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGTCTATGATCCCCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCCAGCGCCGATGGTTTCACGTATCGGATGCTGTACCTCGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 136847-136399 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVW01000006.1 Pseudomonas cichorii strain NB15027 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 136846 28 100.0 32 ............................ TCAAAAAGGCACGCGACTGGATCCGCCAGCAA 136786 28 100.0 32 ............................ TCAGGCTCTGTACATCAGAACTGCCGGACTTC 136726 28 100.0 32 ............................ GGCCGCAGTAGATGCCCACGGGGCCGATATGT 136666 28 100.0 32 ............................ ATCGCTTTGCGCAACTGCACTTGATTGTAGTC 136606 28 100.0 32 ............................ ATGGAGAACGGCATTGAGGCGCAACTGCTGCA 136546 28 100.0 32 ............................ TTGCGATCCAAGAAATAGGCTTCAATTATCTG 136486 28 100.0 32 ............................ TGCGAGGCATCAGGAGCGCGTTGCGGTAAAGC 136426 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTCCGGCGTGTTTGCAATGCTGGTTCATCATTACATCCCCGAGAATCGCGCCCTGCGTCACTGGCTGACCCATGACGTATTGCCGATTCTGCATCAGCAGCACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCCCTGAGCGTATTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGGGACATGCCCCATGTGGTGATGGAAGTGCCTCCCCAGCCCAGACGAGGAATATGGCGCAAACTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGGCGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCAGCCCCCTCCAGTCCCTTTTAAAATCAATGACTTATAAAAGCCTCGAAAAAAAGGGCAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : CCGAATTGCTCCAGGACCTGAAATTCCCAACCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGTGTTGAGGGTGGGTGTGTGAGCGATAGTAAAGTCCGGGTGAATAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTCGCAGCCGTCGAAACCACCCGGATGCCGATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACCATGCCTTTCTCGAGATGACGGGGTATGAAAGCCATGAAATTGTGGGCCGCAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAAGGCCATCGAAAACCGGGAAGACATCGCCACCGAAATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //