Array 1 276148-274990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAYH01000025.1 Streptococcus agalactiae strain NNA011 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276147 36 100.0 30 .................................... AATTCCAGTTGGAATATGCGTCAAACGAAC 276081 36 100.0 30 .................................... CGTTGTCTCATTATTTGATAAATATTTATC 276015 36 100.0 30 .................................... TTCCCTTGCTAATATTAACTTAGGAGCAGC 275949 36 100.0 30 .................................... AAATACAAAAGGTGTTACTGTTTACAACGA 275883 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 275817 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 275751 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 275685 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 275619 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 275553 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 275487 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 275421 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 275355 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 275289 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 275223 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 275157 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 275091 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 275025 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //