Array 1 67397-66508 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGD01000002.1 Prevotella intermedia strain KCOM 1779 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 67396 36 100.0 30 .................................... CAAGAAGAACTATATTAGCTACAATCAGAA 67330 36 100.0 29 .................................... TTCATCTAGCCATTCTTCTATTATCCGAA 67265 36 100.0 30 .................................... CGTCGAGGTGTAATTCCTGCCATACCATAA 67199 36 100.0 30 .................................... TCTTTTTAGGACAACTTGCAGCAAAGGGTA 67133 36 100.0 30 .................................... TGAGATATCAGAGATGAGTTGGAGGAGCTC 67067 36 100.0 30 .................................... GAAGGCTAAGCCAATAGCAATGAAAATTAT 67001 36 100.0 30 .................................... ATTGATACAATTACGGTGGAACTTACAGTT 66935 36 100.0 29 .................................... TTCTGTAAGATTGTAATAGTTTTCTAAAA 66870 36 100.0 29 .................................... TATGTTTCATCTCCAAGATATTCTTGGGC 66805 35 97.2 30 ...............................-.... CACCAAATAAATATCCACTTTCTTGAATTT 66740 36 97.2 30 .....................A.............. ACGAAGTTCCGTATTGATAAATAAATCATC 66674 36 97.2 30 .....................T.............. CAATAAGGAGTGAAAAAAACAACAACAAAA 66608 36 100.0 29 .................................... CATTCTTTGAATCCTCTTCCAATAAGGAA 66543 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.0 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TGAGAACATTAAACGTGCGCACTATGAAGCTATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTACCACAGACACAGAAAACGACGACTGCATAATGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGTTGCTAACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGTCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGGAAAGAAAGCAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGTGT # Right flank : TTATTAACAAACAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGAGGAACACGCCTTTTAAGGGGTGAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACTATCTCGTTATCAGTGTATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAATAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGATTCGGGCGGCAGCAGAATGGTGGCTTTACTGATAGTGCGGCATTGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCGGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCGTATCGTTATCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1476703-1474887 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGD01000001.1 Prevotella intermedia strain KCOM 1779 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 1476702 47 100.0 31 ............................................... TGCAGTACGAGGCATTTTTGGAACTGAAGGC 1476624 47 100.0 30 ............................................... TCAAGTGGCTGGAGGGAGTGCAGGCGGGAA 1476547 47 100.0 29 ............................................... TGCCATTTTCTTTTTCTTTCTTTATGGTG 1476471 47 100.0 30 ............................................... AGATGTTGCCGACTTCGACGCACATATCGA 1476394 47 100.0 29 ............................................... ATTACTATAAATCTGTAAATACATTAAGG 1476318 47 100.0 30 ............................................... ACTCTATTATCTTTTAACTCTAAGCATATG 1476241 47 100.0 30 ............................................... AGTGCCATTGTACGCAAAGCCATTGCCGCC 1476164 47 100.0 30 ............................................... TCTCCGTAGGCTCGCCAGTCTTTATAGCCT 1476087 47 100.0 30 ............................................... GCCTCAACATTGACAATATCCTCTCTCTAC 1476010 47 100.0 30 ............................................... TAAATTAGCAGGTTATGACGTTGTAGGTTG 1475933 47 100.0 30 ............................................... GTGTTGGGCGCAAGCGTCAATCTAAGGCGT 1475856 47 100.0 30 ............................................... TAAAGTTGTTCTATTTAGGACTGTGCATGT 1475779 47 100.0 30 ............................................... GAAAAGACCATCAACGGCTTTGGCGTATGG 1475702 47 100.0 30 ............................................... CAACTTTAACTGATAAAGTTGCTCAAGTTG 1475625 47 100.0 30 ............................................... GGTTATTCTCTTGATCCTAACTGTCAGAAT 1475548 47 100.0 30 ............................................... GCTATTGACGTACGTACGCGAGACAAGACA 1475471 47 100.0 30 ............................................... TCTTTCTCAATGATTTCATTGAGCTCTTCG 1475394 47 100.0 29 ............................................... TTAATAAAATAAACAAATACCAACGTTAC 1475318 47 100.0 30 ............................................... ACTGGCGATTACAAAGGTATGAAAAGATGC 1475241 47 100.0 30 ............................................... ACAAGTGCGTCTGTGTCAAAAAAAACGCTC 1475164 47 100.0 30 ............................................... GATTTAAACGATGATAGTAGCAATCACTTG 1475087 47 100.0 30 ............................................... TATAGTACCCTTTAGCACCATAAAGAGTTG 1475010 47 100.0 30 ............................................... ACTAAATTATAATGCTCTCTAGATATTGGA 1474933 47 97.9 0 ...........T................................... | ========== ====== ====== ====== =============================================== =============================== ================== 24 47 99.9 30 GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTGAAAGATGGATTTACAATGTTTCAGTTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATTAAAAGGGTTTCCACCTTTATTCCAGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGTAAGAAACCACAAAAACCAAATGCACCTGGAGCACAGTTAGAACTCTTTTAATCCTCCTTTTAGAAACAATAAAGTTCCATTCTTAACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACGCTGATGTTCAAAAGCTTAAGCTATTTGA # Right flank : CAACGCCACTTCCGATTTATTGTTCTAAAATCAAGTAAATGGGGCAATAAATTTAACACAAGCGGAAAGGGTGAAATAGAGAAAAAGAGAGCGGAAAAATAGGGGTGGAAAAGTAAAAGAGCCGCTTTTGCAATGCAAAACAATAGGTTTTACCGTGCAAAAGCGGCTCTTTTGGATTACAAGAACGGCTCTTTTGCAGAGCGAAAAGATGATGATAGAGCTCAAAATATAGTCTATATGCGAACAAAAATATTCGTTTTGCAACATAAAAGGTGCAATTCCGTTGCACAACACTACCCTATAAGCTTGCAAGAAGCTATGAACGAAGCACTTACGATAGCAGGCAAATAATGGCGTTATTTGCAAATAAATAATTTAAAGTGCAGAAAAGTGCCCATAATTCGGAAGTTGAGGCTTTGAAATTTAACAGTTATGGAGTCGGTTTAACGAATATTCAGACTTTAACAAATGAAGGTATGCAACCACTGAAAATAAAACAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //