Array 1 114715-114459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOX010000023.1 Leptolyngbya sp. FACHB-60 contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 114714 37 100.0 35 ..................................... TGATGCTGTCGGTATAGGCGTCCTCACCCAGCTGC 114642 37 100.0 37 ..................................... AGTGAAACTGGTATCCCCAAAGGGGCATCTCTATTTT 114568 37 100.0 36 ..................................... GCCGCTTGGCCCCAGGTGGCGGCAAAGGCGCGGCGC 114495 37 91.9 0 .G.A...............................G. | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 36 GTCGCACTGGGCTTCTACAGCCCATGAGGATTGAAAC # Left flank : CTTAATCGAAACCCTAGGAATCCCTGATATACAGGAACTCTTTCATAGAGTAGAATACTTGTACTAAAAGCGCCGCAGACCATGCGAGAGCCTCTGCTCTGTGAAAAATAAGGGTTTGTTTGACTGTGAGACCACAGTTTTACTTTCTGACCCTGGTAGCTGACCACTCCGATGCTGCTGTTGCTAGTGAACGTCTGGAATCGGGCACCGTGCAACAGGATGAGGGGCGCACCCAGCAAGAGAGAACGGACTTACTGTAGTGTTGGCTGCCGAAACAACTCCGATCAAGGAGTAATCCATGCACCCATATTCATATCTTAGCCTCCGCGAACCCCAAGCGCAGGACTTTTTCCTGGTAGGTTCGCGCAGCCTGAAAGCCTTGCTCGTTGGTGTTGCGACACAACAGGGCAAGTTTTGGGTAGTTGAACAGGCTTTCAAGAGTAAGGTTCGCCATCAAAGGGTCTATATGCCCTGTGAACCAAGAGATTTGAGTGGATGCC # Right flank : TTTTCAGCCGATATAGTCATGGTGGTTCACTTGAACTACCATGAAGGTGCATGGATTGAAACGAATCCTGCCATGCTCGACTAGGCAGGTATGTAGGTAAGCGACACGAATTCCGGAACAGTGACATCAATTCCAGAATGATGTCACATAATTCCGGAACGTACAGCTACGGAGCGGGTGAACCCCTTGCTATGTAAGAAACGAGCATGGCAGGATTCGAACCTGCGACCCCTAGAACCGGAATCTAGTGCTCTATCCACTGAGCTACATGCCCTTAGGCTGCACCATTCTAGCATCTGCTAGGGGCGTTGTCACAATGACTCGTCCTTAATCCACAATCGAGTATGGCCAATCGTTACCCCGTTCCTCATGTTTGAAGGTTCCGTTAAGGAGGTCATGACCCTCTATACCTCGGTATTTAGCGATTGTCAGGTGAGCCAGATTGATTTTTACAGTACCGGTGAGCTGGGCTCATTAGGTTTGGTCAAGCAGGCTGTACC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTGGGCTTCTACAGCCCATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 55483-55233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOX010000014.1 Leptolyngbya sp. FACHB-60 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 55482 37 100.0 34 ..................................... TATTGCCTGCCCTCGTAGGCTCGGCGCACTCCCT 55411 37 100.0 40 ..................................... ATGATCCTTGACGGGTTCAACGCTCAGGGCACGCCCCGCA 55334 37 100.0 27 ..................................... CCTTACCGCAGCCGGGCGGTGCTGACC 55270 36 83.8 0 A.........TT.-...............A.G..... | G,A [55236,55239] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 96.0 34 GTTGCATCAGCCCTCCCAGCTATGGGTGGGTTGAAAG # Left flank : GAGGGTCAGTTTGGCTGTTGTACGACAGCTTTTCTTTCCGGCCCTGGTAGCTGTCTGCTTCCAATGAATTTGTTCTTTGAACAAGCTCTGAAGTCGCCGCCTGAGTTCAGCAAGCTGACAAAAGGTGGTTCGCTATTTTTACTTGAGTTCTCTCTTTGTAATATAGCGTAGGTGCGCACCCGGCAAAGGAAGTCAAGCCTTCACATTGTGAGGGTACAGGGACCTTTACAGCCTTTGTGTTGTAGAGCGAGACTGGATAGGTGGCTACCGAATCGCCTCCGAGCAAGGAGGAACCCTCCCCCAATATTCTTTGGCAAACCCAAGCAAGGGTTAAATCCCTAGGGGGTTTGCCAAAATCCTGAAACGCTTGCCTGAAAGCTATTTTCGAGATTCTTGGTTGTTCTTCGGGAATCTCTAAGCACTCAGAGTAAAGTCATAGGGAGTAGGTTTGCCAAACCAAGGCCTAGAACCTTTTCCCTGCAAGGATTACGCGCTGCGGA # Right flank : TTTTTCGGTTAGGTGGATCCTGCATTCAAGAGCCTTTGGGAGGGTTGAAAGGAGCGCTGCGATTGCACCAGCGGAGGAAACTCAGAATTGAGTGTTTACGACATCTAACTTGCGAACAGCATATTCACCTGTGTAAATCTCTTATTTAAGCAAAAGCGACACTAATCTGCGAAAAACGACACTAATCTGCGAACCGCGACATTTAGCGTGCGAACGTACAGCGTTTGAGAGAATGGAGAATAGGAGATTCGAACTCCTGACCTCTGCGGTGCGATCGCAGCGCTCTACCAACTGAGCTAATTCCCCTAAACTTGTCAGTATTCTACCAAAACCCCTGTCTACTTCTTACTTCGGCCCTTGGCAGATCGCCTCTTATTCCCCGGCTGCGTCTGATGCGCGCCAAAATATTTCTCGCTGCGGTAGCGCAGCCACACCCGCAGGGTCTGGGGAATCTGGTCTTTTTGCTCCTTGGCGAGAGTGTTGTAGAGGGCTAGCGCCTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCAGCCCTCCCAGCTATGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 201-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOX010000070.1 Leptolyngbya sp. FACHB-60 contig70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 201 36 100.0 35 .................................... TCCCAGCAAAACCATCGTTCTGGGCCAGCTCTTTG 272 36 100.0 35 .................................... TCGAAGCCCCAAAGCCGAGCACTTCTAAACTTGTA 343 36 94.4 35 ............T..C.................... TTACTCAGCCAGGTACAGGCCATTAACGAGTCAGG 414 36 83.3 0 ..C.....G...T..C........G...G....... | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 94.4 35 TCACAATCAACCACCTTGGACAGGAGAGATTGAAAG # Left flank : ATGGTTTGTTCTGAAAAACCGGATGCGAAAACAGATTCAATCCGGCCAACCCTTTCGCCAAGTCGTTGACCAAGCCTTCGTTGACTGACCGAATCTATCCACGGATTGCTATAACTAACCAGTACAGTCGGGATGGATGAGTCGATCCGCGCAAATGACTTCTGAAAGCCTTAATTTGAGTGCCTTTGGGGAGCCTGCGGT # Right flank : GATGAGGTTCAGAAAAATCTGGAGCGAGTTGAAAGAAGGCAGTGGATTGTGATTCTTGCATGAATCGGCATTTAGCCACCGCTACAAGGCAGCAAGCGACACTTATTTTGTCACTGCCGCTTCAACGACAGCAATGTGTCTCGATGACACTAACTTGTCATCGATGACAGCAATGTGTCACTGATGACAAACAAAGTGTCACTGTACAACAACAAGGGCGGATGATGGGGCTCGAACCCACGAATGGTGGAATCACAATCCACTGCCTTAACCACTTGGCTACACCCGCCATATTCGCGATACTTAATATAGCATCAATGATTGCCTTAGTGCTAAGCTCGGTCAACTTTTGTTCAGATGATTTCCAAAGCCGAGGCCCCGTAGCGGAGAGCTGACCTAAAAGCACCTGAGGGGATTGAGATTCCCTCCCGTTGAGGGTGGCCGTTTTTGCATCCAGGCGGCAATGTTGTGCCGTATTGGGATTATCTGTCTCAGGGGTT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAATCAACCACCTTGGACAGGAGAGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 251712-251382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOX010000049.1 Leptolyngbya sp. FACHB-60 contig49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 251711 37 100.0 39 ..................................... ACCCTGCTCGACTACTCAGGGTTCACGCTGCGATCGCAC 251635 37 97.3 34 ..................A.................. CAGTCGATGACTAGCCGGTAGTGGTCGATGTGGC 251564 37 100.0 36 ..................................... CCACTGATTCCAGGGTAGCGGCTGCGCAGCCAGGCC 251491 37 94.6 36 ....T........................A....... TTTTTCCAAGCCTCGGCCTGTCAAGGCTGTAACACT 251418 37 78.4 0 ...............AT.A..C.AT...A......G. | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 94.1 36 GTCACAATCAACCACCCTGGCTAGGGGAGGTTGAAAG # Left flank : AAAAGCTTTGAACCTGGAAAATTGAATATCTCAATAGCGCCGCGACTCATGCTTTGGCCTCTGAGTCGTGTGAAATAAGGGTTAGTTTGGCTGTCGGATGACAGCCGTGCTTTCTGGCCCTGGTAGCTACTCGCCCTGATGCTGTCGGACGAGAGGCTTAGGCTTCTCCGAAGAGATTAAGTCATAGTTGATGTGCTAGTAACTTCAATTATGGCGTAGGTGCGCTCCCAGCAATAGGGGTGCGGATGTACTGCTGTAGCGGCTACCAAATCACCCCCGAGCAAGGGGGAACTCGCTCCAATACTGGGTTTGAGGGTCTTTTTCAGGGTGGAATTATCCTGAGCGATTCGCGCAAAGTCTGAAATGCCCGCTTGACAGGTATTTCAGACTTTTGTAAAGGTCAAAAGACCTACGACTTAACCAGTAAAGTCGGGATGATGTGCCGATCCGCGCAAATGACTTCTGAAAGCCTTAATCTAAGAGCCTTTGAGGAGCCTGCG # Right flank : AAATCCTAATAAGCGCTACCAGCGCTGACTGTAAGGTATAAGCGAGTTGAAAGGTAAAACCTTAGCCTTCTACAGGCTTCTTAGAAGATAATAATGTGTTACCAGTGGGTTGACGACACAGTTGTGTCCCGATGACAGAAACATAGCTCTGGCGACATCATTGTGTCACTGCTGACAAATAATGTGCACTGCACAGATCTTCTGTAACCTGCGCTAAGGAAAGGTTACAGAAGATCGGAGAGACATTCAAATTGACGCTGTGACAGCCAAGTTGCCGCTACGGACAAATAAACTGTCGCTCAACAGTACAAAGCGGGTGGGGGGAATCGAACCCCCATCATTAGCTTGGAAGGCTAAGGTTTTACCACTAAACTACACCCGCAAACCAATTTTTACTCTACCACAATGGGCCTAGGAGTTGAGCTACCTGGGCCGCTCAAGTATCAAGGTGACTAACCCTCACCCCTTTTGATGGATACGATACCAGATGCTCTGAACTA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCAACCACCCTGGCTAGGGGAGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 22130-26942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOX010000009.1 Leptolyngbya sp. FACHB-60 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 22130 36 100.0 37 .................................... TAGGCGTCGTAGGGAGCAAAAGCGGTAAACGTTGGAA 22203 36 100.0 41 .................................... AATCAGCGGGTAAACCTTAGTGCTCAGCAGGTCAGGGCGAT 22280 36 100.0 48 .................................... ATCTTTACGGGTTCCCCTGTCTCTGCGTACAGTGAAATTAGCCGCCTA 22364 36 100.0 39 .................................... CGATCCTCCGCTCGGCGCTGGTCGTCGCGGGCCTCACTG 22439 36 100.0 44 .................................... TGACAGGGCCAGCAGTACCACCGGGTCACTCTGCTGTGTCTCCA 22519 36 97.2 36 ..........C......................... CCTTTTGATTGTTTTCATGCGATGCCTACCTGCTGT 22591 36 100.0 40 .................................... TCCGACATCGGCGATGCGATCGTGAATCGCTTGGGCGTAG 22667 36 100.0 37 .................................... TGCAGGTGACGCTTAACCATCAGGCCGGGGTCATAGT 22740 36 100.0 43 .................................... TAGATGACGGTAGCGCACCGCCGGAGTCGCGCCCGGCATTCAT 22819 36 100.0 40 .................................... GATGCTGCCTTGAAAGCCGTCTACTAAGTTGTAGTCGCCT 22895 36 100.0 38 .................................... CATTTTGCGCAGGTCGTTCAGGTTCTGGAAGCCGACCA 22969 36 100.0 44 .................................... CTATGACGGCATTGTGCAGATCCTTGTCGAGGGGGCCTGGCTTT 23049 36 100.0 44 .................................... CAGACAAATCCTATTAATATTTCAGTTATTCCTAGCATGGAATA 23129 36 100.0 50 .................................... TTCTTCCCCGGTCATAGGCTCACACATCCTTTATGAAATCTCCACGATGA 23215 36 100.0 43 .................................... AGTTATCTTCTAAATAAAAACCGCCTACTGATTGATTGTTTAA 23294 36 100.0 35 .................................... CTAGGTCCACACGCTTATCCTGGCTTCTGCGTGGA 23365 36 100.0 43 .................................... TTGCCCCCTACCTGAGTCACTTGGCGGGCGTACTCTTGGGTAA 23444 36 100.0 45 .................................... TGCATCGGGGCAGGGTCAACATGGGTCAGGGCAGATAGCTGCCTG 23525 36 100.0 45 .................................... CTGACATGGTTGAACGGTCTACGATCTCGCCGTTGCCGACGTAGA 23606 36 100.0 38 .................................... CCATTGCCCCTCACAATCACAACAAAGTCATCAGGCAA 23680 36 100.0 38 .................................... CTATGCCCCACCGATCGCACAGCAGCAGCCCACGACGA 23754 36 100.0 43 .................................... CCCCCATGATTAGATCCTGGTAGATCAGGTCTCTCTGGAGTAA 23833 36 100.0 38 .................................... ATAGGATTCACATCGGCAGGGTTTACAGTCACATGGGA 23907 36 100.0 38 .................................... TCCTTATTTACGGTGGTGTGTTGCGGTTAGTTCTCTAA 23981 36 100.0 45 .................................... TGTTTCTTTCTCCAGTCGATCGAAGTTAATTCTCGCCATTGTCTG 24062 36 100.0 34 .................................... TTGAGGCTTACCTAGCACCTCGGACAGGAATCGG 24132 36 100.0 41 .................................... TCATCTATCATCTGCTTGCCCTTCGACATGTACTTGGCCAT 24209 36 100.0 42 .................................... ACGGGGACGCACCGAACGATCGCGCTAACCGGCAATATTACT 24287 36 100.0 44 .................................... TTGACGTTTATTTAGTAGCTGTAGGTACTGGTACACCTGTTGAT 24367 36 100.0 42 .................................... TGAACTAAGCGATTGCCCCTATCCTGGCCACCCTGTCCATAA 24445 36 100.0 38 .................................... CCAATTGTTTCCCAAAAATTATCTTGAAAAGTGATTTC 24519 36 100.0 45 .................................... CTGCCCAATACTGCCTAACCTTCTTATCCTTCAGCGCCATATTAA 24600 36 100.0 44 .................................... ATCCTGCGCTTTCTTTCCAGAGTCAATCAGATCGGAAAGTTTAT 24680 36 100.0 47 .................................... CTGAACTCAAACAAACGTTTTCAATATATCGCAGCTTATGCCGCCGC 24763 36 100.0 37 .................................... TAACCAGCGCTAACCTCAGTGGCCTTGCCCGACTCAA 24836 36 100.0 35 .................................... TCGGGATAGTTCGATCGCACGGCCCGCCCATGTGT 24907 36 97.2 40 ....T............................... TGCAGAGAAGCAGATCAATGAATGGGGGCTTCAGGTATTC 24983 36 100.0 49 .................................... CTGTGCGAACGGATCGACAAACTTCTTTGAGGTGCCGCCGTGGCAACTC 25068 36 100.0 42 .................................... ATCAGCAGGTTGCATACCGCCTCTATTGATTATTTTGGTATT 25146 36 100.0 40 .................................... TGAGCCAGGTCGCCCCCAATGTAGTTCGAGGAATAGTTGA 25222 36 100.0 36 .................................... TTTATAAAAGCGATTTGCCGATTGGGGTCAGCTTGA 25294 36 100.0 39 .................................... TTTGGCTTCAGTCGGATACCAAATAATGACAGTTTCGCA 25369 36 100.0 48 .................................... AAAATCATTTCCTCAACAAGCCTCCGTATAATTTTGGGTCGCGCCTGT 25453 36 100.0 40 .................................... CTCAGCGGGGCGACACCCCAGTCATGGGCCAGGTGCACCA 25529 36 100.0 39 .................................... TTTTCAAACCGCTTTAGGCGATCGCTCATCCTACGGAAG 25604 36 100.0 43 .................................... TTACCCGTTCCTCGAACACCTTGAAGCAACACAAGGTTGGACG 25683 36 94.4 42 T..............T.................... CCCCTGCCATGTTGCCATCACCAGCATTCAAAAGAAACCCTT 25761 36 100.0 38 .................................... TTGGTATAAAAACGACCCTTATTTGAATATAAATCTAG 25835 36 100.0 43 .................................... ATAAAATGCTCGGCCACCATCAGCCACAACTAGAACCCGGTCA 25914 36 97.2 40 .............A...................... CTCTCTCGAAAGAATGCCGTAAGAGATACCTGCCGAGAGT 25990 36 100.0 42 .................................... AATTCTTCTGGGTCTTGGGGCATGGTCGCCTCTCTGGTGTGA 26068 36 100.0 42 .................................... TTCAGCGCTTTGATTTTTTGGCGTAACGTCAAAGGTATTTTA 26146 36 100.0 39 .................................... CTTTAGGGTTGCAGAGATTGCTAGGAATTCAATAATTAC 26221 36 100.0 36 .................................... TTCCCACGGAAGCCTTGGCCTGTATACAGTTACGAA 26293 36 97.2 47 ..............................A..... TTGAGCTGCTGCTTACCTAGGGGGCAATGTTCGGCGATGATGCTCAG 26376 36 100.0 36 .................................... TGCCCCAGGTGCGATCGTTCTGTCTGCGGCGTTTAG 26448 36 100.0 44 .................................... CTGCCCAGTCATCGTATCGATCGCGGAACACTACGGACGCAGAA 26528 36 100.0 41 .................................... CATTCTCGCTGTCTACGCGACGAGCTCTAAAGCGTCCTCGA 26605 36 100.0 42 .................................... CTGTCCTGGATTGGGGAAACGTTGCCAGATATTTCGCGGAAT 26683 36 100.0 39 .................................... TTATTGTATCCAGTTCATCTTCCACACAATGGATTTTTG 26758 36 97.2 36 ...............T.................... ATAGTTCGTCAGCGGAGACAATCTCGGTTTGCAGAG 26830 36 94.4 41 A.........................A......... TCTGGGTATACCGAAACCAAGTAGCCTTGGCCTTGGGGCAG 26907 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 63 36 99.6 41 CTCCCCACCCGCTGGGGATATTAATTGAATGGAAAC # Left flank : AGTCAACCAGGTTTCAGCCTTATTCGATCCGGTGAGGCTATGTTTTTATACATTGTAGCTTATGACATCCCATCAAATAGGCGGCGAAAGAAAGTGTCTGATATTCTTGAAGGCTATGGTAAGCGAGTTCAATATAGTGTTTTTGAGCTTGTTCTAGCTAAATCAAAGTATGATGATATGAAACGAATATTAAGCCGTTATGTTAATTTTGAGGAAGATAGTCTTAGATTTTACCCAATTTCACAACATACCTTGGAACAGGTTGAAATTTGGGGTGGTGTACCTCTAACTCAGATGCAGAAATCGATTATTGTATGAATTGCGAATAAAGTTATGAGCAGCGGTAGGACTTATTATTTGGTGATATCCCTCGAAAGGCGACTGAGTAAGGTTTTCGGGCTTTTGCAAGCCAACTCTGGATTGTCTGTAGTCGCCAAGGCAAGCATCCTTCGCAACCGAGGCCTGGACACCCTGCTGTGCTTAGGTGCAAGATAGGGTCA # Right flank : CTTGTCAGTCGTGAGCGCGATCGCGCATAAAGGACAGGTCATCCCGGACAGTCCGCTCACTCACCTCTAGAACGTCAGCTAAGCTTTGAGCTGTTTGCTGCTCTGGCTTTCGGATGAGTTCATCTATTTTGAGTAGTCGCTCTAACTGGATGCGTGACATTTGGCTTCCTTCAGTTGTATGGCGACCATCCTAAGCAGTTAACCCGGCAAAAAAGCTTCCGGGTTAACTGCTTAGGAAAAGTTTTCATTATCTCCGGAACAATGGCGTAAGTTTGAAACAAACGCACTGGTCTCATATGTAGCTATGGGACAGGACGATTGAAAATACACTCATAGCTAAATTCGTTTGTGATGGAATCGTTAGCATTTCCCTTTACAGGTCGTCGAGTTCATTAGGGTCGAATTCGAGGTTGAGCGTTGTGGGTTGGGCTTCTTCAGCTTTGGTAGGTTGCGGGACTTGCACTGGTGCTGCAGCCGGTGCTCCTGTTTGAAAGCAGTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACCCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //