Array 1 634625-636704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822041.1 Streptococcus thermophilus isolate STH_CIRM_1122 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 634625 36 100.0 30 .................................... TTCTGTAGCCACTCCGTGGATGCCTTCAGC 634691 36 100.0 30 .................................... TTCTTTAGTTCGGACACCCTCAACACCTAT 634757 36 100.0 30 .................................... GCTTTGATTGGACGGAAAATGGTATCCCTG 634823 36 100.0 30 .................................... CATTAAATCGCTTGAAGCAGACATTGAAGC 634889 36 100.0 30 .................................... TTCCTCATCTTTCTCCGCTTTTGCTAGCTT 634955 36 100.0 30 .................................... TTAGACCAGATGGACAGATATTCTTCATCG 635021 36 100.0 30 .................................... TCATCAGAGCAACAATCACGGGAAAGACCT 635087 36 100.0 30 .................................... ACACTCACCTTATTCCTGTAGTTCAAAACA 635153 36 100.0 30 .................................... TACCTTAACATTTTCGATATTTTTCAAATT 635219 36 100.0 30 .................................... TTTGACTGCTTTTTTATCTGAATTGTAATT 635285 36 100.0 30 .................................... CAGTAACCTAAAGCTCTATCAAGCCTATTT 635351 36 100.0 30 .................................... CGTCAAGCTGACAGACCTTGACAACAAATC 635417 36 100.0 29 .................................... AGGCATAAATAACATTGATAACCCTAACA 635482 36 100.0 30 .................................... GCCAACGAGGTCAAATATGTCAACGGCATT 635548 36 100.0 30 .................................... GAAATAGGAACTTCAAAGGTAATTTCTTTA 635614 36 100.0 30 .................................... TGTAAGTAGTCAATATTCACTTCTGATAAC 635680 36 100.0 30 .................................... ATTTAGAGCAAGGAAAGCAGTACATCATTA 635746 36 100.0 30 .................................... CTGTAATCATTTTTAAATCAGGATTATCAA 635812 36 100.0 30 .................................... TTAAATGTATCCTAGTATTTTTGTACTATA 635878 36 100.0 30 .................................... CCATCAGCCAACTGTATCGGCTACTTTCTA 635944 36 100.0 30 .................................... ATGCTCTTGGCGACTATCTCATGGAGCGTG 636010 36 100.0 30 .................................... AGGAAAAAACCCAAACAACCCAAAATGTTA 636076 36 100.0 30 .................................... TTAGCGGTGATTGGAATAGAATAAGCGAAT 636142 36 100.0 30 .................................... CTTCTACAGCAGTTTAAGACACATTATCAT 636208 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 636273 36 100.0 30 .................................... TCTAATTCTGTCACCACGACTATATCGCCA 636339 36 100.0 30 .................................... CTGAAACCTTGTTTTGAAGCGCTTGGAAGT 636405 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 636472 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 636538 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 636604 36 100.0 29 .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 636669 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATTTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //