Array 1 60632-59506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFZ010000006.1 Dickeya dianthicola strain A260-S21-A16 A260_(paired)_trimmed_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60631 28 100.0 33 ............................ TGAGTGCAGTAAGGTTAGAGGAGTAGGCCGAAA 60570 28 100.0 33 ............................ CGGCAGGACGTGAGACCTTCCGAGTGTGTGCGG 60509 28 100.0 33 ............................ TGAAACTTTTCCTTATTGATTCAGGCGATGTTA 60448 28 100.0 33 ............................ TGGATGGTAAGTACTACTCACATAGCGCCACGG 60387 28 100.0 33 ............................ TGCGCAAGATGTGCTGCAGTGGCTGGGGTACTA 60326 28 100.0 33 ............................ CTTCGCAGCGCATCGGGCTTGTTCGGCCTGTAG 60265 28 100.0 33 ............................ CTGCTTACCATCAGCGAGGTTCAGAATCTCTTC 60204 28 100.0 33 ............................ CTCCCCATAAGTTGCCTGCCCGTCAGCATGGCG 60143 28 100.0 33 ............................ CAGCGTGCAACATTCAGTACTCACGTTAAGGGT 60082 28 100.0 33 ............................ CGGCTAGTGTATACGGTGTGTGATACCAAAATG 60021 28 100.0 33 ............................ TCAAGCCCTGTCCTGGTATGACACCAGCAGCAG 59960 28 100.0 33 ............................ TGAAATAGCTCTGTAAGCCTTGCTGTTACTGGG 59899 28 100.0 33 ............................ CAGGAGGTACTAGTATGACTGTTAGACTGAGTA 59838 28 100.0 33 ............................ TCCTTCAGCGCAGAGTACGGCGGATACATCTGG 59777 28 100.0 33 ............................ GCGACGGCACCGCGTTGTTCAACAACTGCGATC 59716 28 100.0 33 ............................ TCTGTTCACCAAGTACCAGGATAACTTCGGCAT 59655 28 100.0 33 ............................ TTTCTCGTCGGCGCTCATTTTTCCATTCAATCG 59594 28 100.0 33 ............................ CGTAAACCTGCTGCGCGTTTTACTTCGCTTTCA 59533 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACCGTTGTGCATTGATCTGGCATTTTCTCTCTCACGAGAAATGGCTGGCCACTATGATAAACACAAAGTATCTGACGCATTCAGGAAGCGAGTTATTGCCATTGATTTGCTTAATCAAATCACCGCAGATGTTAATGAGTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACCTGCCACCTGCGGTTCGTGGGCGTATGAAACTCTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCAGGTGTGAAAGACTCCGTGGCACAAACTGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCTGGTCTTATGCTGTTTCGAAGTATTCCACAACCGCCAGGTTACGAAATTCGTTACAAAGGCGAGGTAAGAAAGCCAATTACTCATATCAGTGGATTGCAACTGATTATAGAAACCCTGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : CGATGTCAACAACGGGTAAAAAGTGATCCACTTACCGTCACCACCAACGGTTTAATATTGATCCACCTTGTTTACTCAGGATTAGCTTCTGCGATAACCCCGGCTTTGCGTTTCTGCTTCAGTCTATAGCTCTCCCCCTTTATTTGTACGACGTGCGAGTGGTGTAAGATCCGGTCCAGCATCGCTGATGTCAGAGCTGCATCACCGGCGAACGTCTGATCCCACTGCCCGAACGGCAGGTTAGATGTCAGGATCATCGCGCTCTTCTCGTAACGTTTGGCGATGACCTGGAAGAACAGCTTTGCCTCTTCCTGACTGAACGGCAGATAGCCGATTTCATCGATGATGAGCAGCTTTGGTGCCATCACGCCACGGTGAAGCGTGGTTTTATAGCGACCCTGACGTTGCGCCGTTGACAGCTGAAGCAACAGGTCCGCCGCCGTTGTGAAGCGAACCTTGATGCCCGCACGCACTGCCTCGTAGCCCATGGCTATCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 466-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFZ010000023.1 Dickeya dianthicola strain A260-S21-A16 A260_(paired)_trimmed_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 465 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 405 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 345 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 285 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 225 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 165 28 100.0 32 ............................ AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 105 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 45 27 89.3 0 .......................-..CG | GG [22] ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGGTTGCTGGCGTTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9181-9320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFZ010000023.1 Dickeya dianthicola strain A260-S21-A16 A260_(paired)_trimmed_(paired)_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9181 28 100.0 32 ............................ TCTTCTGTGAGTTCGCGCACTTCAGACAATGT 9241 28 100.0 32 ............................ GTGCCGCCGCCAATGCTGTCGCTGTCGCCGCC 9301 20 71.4 0 ....................-------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 90.5 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : | # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66934-64330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFZ010000008.1 Dickeya dianthicola strain A260-S21-A16 A260_(paired)_trimmed_(paired)_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 66933 32 100.0 36 ................................ AGCTCCTCATCAGTTGCCTGCCCGTCAGCATGGCGC 66865 32 100.0 35 ................................ TTTTTGTGAGTGCCTGTAGTCTTTATCTCAAGCCA 66798 32 100.0 34 ................................ TCATTCTTCGAACTCTCGTTCATTCTCCTCTCTC 66732 32 100.0 35 ................................ TCTCTCTATAGTGACAGTCTATTGAGTATTTGAGC 66665 32 100.0 33 ................................ CCCACATTTACAATTTCACCAGCCCTGTGACGC 66600 32 100.0 35 ................................ CAGTTCATCCGGCGTGTAAACGCCAAGCAGCACAT 66533 32 100.0 34 ................................ TCGCTTTCCCGATGCGATCGGCAATCTCTGTAAC 66467 32 100.0 34 ................................ AGTGAAACTGTAATCATGTTACCCCCATTAACCC 66401 32 100.0 33 ................................ ATGTTCAAGCAGCTGTTCCCCTATCTGAACAAG 66336 32 100.0 34 ................................ TTCGGCAAGTCTACTGACAAAGGCCAGGTGACTG 66270 32 100.0 33 ................................ CGTATCAAGTTCCAGACCGAAATGGACGGCCAT 66205 32 100.0 35 ................................ AAGATCATCGGTGGTGTTGTCGGGACTTTCCTCGG 66138 32 100.0 34 ................................ AATCGCACCGAGAATTTCAAGCCAAGGGATTCAT 66072 32 100.0 34 ................................ CTCTTTATTGTTGATCGTCGTTAATAATTCTACA 66006 32 100.0 33 ................................ CTCTGTCGTGATTTTGGGAGTATTGATGACATG 65941 32 100.0 33 ................................ ACTCCATCTGCTTTGGGTGCTGTTGGACATCGA 65876 32 100.0 34 ................................ TATATGTGGGGCGGCAAGACCCTATATTACAACA 65810 32 100.0 34 ................................ ATTTTAAACCCCTCTGGATATTGCCTATACGGCA 65744 32 100.0 34 ................................ CTTTGATCCAGACCATCGCTGGTATGGTGTTGTT 65678 32 100.0 35 ................................ TTGACTTCCTGCAGGATCTGCAGCAAGCGAATCTT 65611 32 100.0 34 ................................ TTCAATATATCGGTCACGAAGGACAGACGGGGTT 65545 32 100.0 33 ................................ CCTATCACGCTGATCCAGCTTCAGGACATGAAC 65480 32 100.0 33 ................................ TTGTGATGAGCCAGGATGAAATCCAGATTTCAT 65415 32 100.0 34 ................................ ATATTCCTGAGGGGTGCGCAGGTCACTCACGATA 65349 32 100.0 35 ................................ TGGTTAGTTACGTTCGTGAAGCGGATCATTGAGTT 65282 32 100.0 33 ................................ AACCATGCGGCGCAGGGTAACGTTGCCAATCAG 65217 32 100.0 34 ................................ CCTTCAGATGATGTGTATGGTTGCCGGAATGCCA 65151 32 100.0 34 ................................ TCGTGAGCCAGGCGATTCAGCTCGAACGTGAGGT 65085 32 100.0 35 ................................ CTTTGATCCAGACTATCGGCGGCCTGCTGATGTTT 65018 32 100.0 34 ................................ TGTCACATGTATTGTCAATTTAATTTACAGCGGG 64952 32 100.0 33 ................................ GGTAAAATGCAACTGCTCGTAGCCCACGATCTC 64887 32 100.0 34 ................................ AGAGTAGTAGCAGACTCAAACGCTTTCTTGCCGT 64821 32 100.0 34 ................................ ATTTTTACCGTCACTGGCTGGCCTGGTGATTTAC 64755 32 100.0 34 ................................ TATCTCCAGCATCACGCCGCCGATGCTGAACATT 64689 32 100.0 34 ................................ TTTGGTGATAGCTTACCAATTTTACCCTCCGCCC 64623 32 100.0 34 ................................ TCTTTATGCGTTAACAATCACAATGCCGTCACCG 64557 32 100.0 34 ................................ CGCCACTGGCTCCCATGCCTTGCGATAGGTTGCC 64491 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 64425 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 64360 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.5 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //