Array 1 76589-76440 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCH01000006.1 Cronobacter sakazakii strain MOD1_AS-2 AS2A_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76588 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76528 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76467 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2379-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCH01000017.1 Cronobacter sakazakii strain MOD1_AS-2 AS2A_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2378 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 2317 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 2256 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 2195 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 2134 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 2073 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 2012 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 1951 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 1890 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 1829 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 1768 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 1707 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 1646 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 1585 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 1524 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 1463 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 1402 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 1341 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 1280 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 1219 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 1158 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 1097 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 1036 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 975 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 914 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 853 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 792 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 731 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 670 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 609 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 548 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 487 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 426 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 365 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 304 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 243 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 182 29 100.0 32 ............................. GGTGCGAAGCTGTTAAGCGTCTTTCAAGAGCT 121 29 96.6 32 ........................T.... GAGGAACGCCGCCATCTTTCGGAAGGTACTTC 60 29 86.2 0 ....G.G................T.T... | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GCCGTCGAGGGTTATTTGCTTGTTAGTCCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26359-27425 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCH01000015.1 Cronobacter sakazakii strain MOD1_AS-2 AS2A_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26359 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 26420 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 26481 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 26542 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 26603 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 26664 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 26725 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 26786 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 26847 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 26908 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 26969 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 27030 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 27091 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 27152 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 27213 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 27275 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 27336 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 27397 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //