Array 1 118845-117819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGG010000005.1 Clostridium cadaveris strain BSM-178-APC-2A Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118844 36 86.1 30 CAA..T...T.......................... AAAATAAAAGGTATATAGCATGTCCTTACT T [118834] 118777 36 100.0 30 .................................... ACTGACGGAAAAACACAAGCTGAAGACCCA 118711 36 100.0 30 .................................... GTTCATCCAAGTACACATAGTTTAGATATG 118645 36 100.0 30 .................................... CAACAGAGCAACCAAGTAAGCCAGTTGAAG 118579 36 100.0 30 .................................... AGTTCCTCTTTTAATACTGTCTTTATTTCA 118513 36 100.0 30 .................................... ATTGTATAACATTGATTGTATGGAAGGCAT 118447 36 100.0 30 .................................... AAAACCACCTAAGATTCCGGAAAAAGCACC 118381 36 100.0 30 .................................... AAGGCTTTTGTAGATTATGCGAGAATAAAT 118315 36 100.0 30 .................................... CTTGCTATCTCTCTTCCATCTAAAATAACT 118249 36 100.0 30 .................................... TATGCTGATGTAGATTTTAACAATTCTAAG 118183 36 100.0 30 .................................... ATTTTTTCTATTGCTTCCTCTTCTGAATCT 118117 36 100.0 29 .................................... TTAATAATTATGATTGCGATGTAAGTATG 118052 36 100.0 30 .................................... TTTTCTTCTGGTTATGAATATACTATGCGT 117986 36 100.0 30 .................................... TCTTATATAGCAACTAAAATAGCTTATGTG 117920 36 100.0 30 .................................... TTAAACCAAAGATAAACATTACAAAAGCGT 117854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTATAGTTCCTACTAAATTCTCGATATGCTATAAT # Left flank : GATATTCTTTCTTTATTTTTAAAGAATACATTATAGGTTTCAAACTCTGGCCTTAGCAATGAATCCATTACTCTTAATTCTCTCATTATAACTGTTGCTCTATCAGTAGAGAATTCTTGGCTATACGAAAATATATCATAAAGCCAATCTTCTTGTGGATCTGGCTTTTTCATATTAGAATAAACTAATATATTACTTGTTGTATCTTCCTTTTCTATGTAATGCTTTGCCCAAAAGGCATTGTTTTTTGTTAATTTAATTACCTTAATACCTTCTAAATCAAAAGTATCTATATCTTCAATAAAATCTTCACTTTCATCATACCAAAATACAATATGACGAGTTTTTCCATCACCTAAAGGCTTTGAAAATAACTCTTTTAGAAAATTTCTTATTTCCTGTAAATTCATTGATACACCTCAATTATTTATAAATTATATATTAATACTAATACAATCATTATATCAATAACCTAATTAAATAAAAAGTGTAGTTAAACT # Right flank : AGGAACTATGAAACCCCTTGAAGCATCTAGTTTTCAAGGGGTTTTTACTGTTTAAAAAACATTTAATTGTGATGAATTCACCATCTCTTCTTGCTTTTTTGGTGAACCTACAAGAAATTTCATTTCTGAATATTGCTTTTCTGTAATTTGTAAGTATCGAACAGATCCTTTACATGGTAAATTTTCTTTTAGTCTTCTAATATGTTTTAATGCTCCTTCTGTTCCATTTACAATTCTTGAATATACAGAATACTGGATCATTATATAACCATCATTCAATAAGAACCTTCTAAAATTTTGATACGCTTTTCTATCTTCTCTCTTCACTACTGGCAAATCAAAAAATACAATTAATCTCATAAAATTATTATTCATAATAATGATATTCTAAAGGTTTAATTGATGGTAATTTTAATAATCTATAATCCTTTTTACTAACAGATGTGGTATACGAAGCAATCATTTTATCAATGGCATTTAATACAGAATGATTTTGACCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTACTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 53500-55100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGG010000015.1 Clostridium cadaveris strain BSM-178-APC-2A Contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 53500 29 100.0 36 ............................. AGAGAATGCTATGGATGAATCAAATACACTTCAAGA 53565 29 100.0 37 ............................. TAATCAGTTTATTGGTGAGGATAATGACACAGAGCTT 53631 29 100.0 37 ............................. AATTTATATACTTATATAAAAACAGGGTCACGATAGG 53697 29 100.0 37 ............................. TTTATTGAATATATGGTATATAAAAATATAGATTAAG 53763 29 100.0 36 ............................. TTTATTGAATATATGGTATATAAAAATATAGATTAA 53828 29 100.0 37 ............................. AATTTATATACTTATATAAAAACAGGGTCACGATAGG 53894 29 100.0 37 ............................. TTAGTTGATAGACAAAATTATTTATACCCACCTGCTG 53960 29 100.0 37 ............................. TGATTCAATATTTAATACTAATATAACTTCAATGGAA 54026 29 100.0 37 ............................. TACTATTTAGTAGTTTACGCGTATATAGGAGAAAAGA 54092 29 100.0 36 ............................. AGTAAGAATTCATAAATTTGGACACTTGGACGAGGA 54157 29 100.0 36 ............................. TCTTCTGTATCTTCTTGTATTATTATTAAAACTCTA 54222 29 100.0 36 ............................. GGTATATTACATCTATTACGCCACATACTAATATAA 54287 29 100.0 37 ............................. AAATCTGCCTTAGTAGTACCATGTGGATTGCTCCCAC 54353 29 100.0 36 ............................. TTTTGAATAAGTCCCCATTCTCTAAGTTTGTTCCAA 54418 29 100.0 36 ............................. CAATGTCATGGAATTTCATACCCTCGATTTCTTTTA 54483 29 100.0 36 ............................. CAGATTATTTATAACAAAGCTATTTTTTACTGTTAC 54548 29 100.0 36 ............................. ACGGTACGAAGCAAATTACCATACTACAATAAAGAT 54613 29 100.0 4 ............................. AACG Deletion [54646] 54646 28 72.4 5 AA.CA..............A.G-..T... CGGGT Deletion [54679] 54679 29 100.0 36 ............................. TTTTCAGAAATATAGAAAGGTAAAATGGTATGGAAG 54744 29 100.0 36 ............................. CGTGAATTTTCACGTTCTGATCGACTTTGTTGGAAT 54809 29 100.0 37 ............................. AAGGTACTTAAATCTAAGCTTGAAGAAGGGTCGTCCT 54875 29 100.0 36 ............................. ATTCATAGATGTAAGTCCATCATTGAATTGTTTAGA 54940 29 100.0 37 ............................. TTATATGCGTGATACATCATATTCCAATTATCGAAAC 55006 29 100.0 37 ............................. TGTAGTATATAGATTTATTAACCCAATTTAATAAATA 55072 29 86.2 0 .......................TAT.T. | ========== ====== ====== ====== ============================= ===================================== ================== 26 29 98.4 34 GTTTTATCTTAACTATAAGGAATGTGAAG # Left flank : TTAAAATGGCTGTAGAGAATGAAGAATATAAGCCATTAAAGGCTTGGTGGTAGTATGTTTGTTATTTTAACATATGATGTAGGAGAAAAGCGAGTAAATAGAGTTAGGAAGTGCCTTAAGAAATATTTAACTTGGACCCAAAATTCAGTTTTTGAAGGAGAAATCACTGAGGGAAAGCTTAATAAATGCTTAGCAGAGGTTAATAAAAATCTTGTTAAAGAAGAAGATTCCTTATACATTTATATAGTAAAAAATAATAATAATGTTAGAAAAGAAGTTGTAGGTCAAGAAAAAAGCTATGATGATCTTTTTATATAACGCAGTAAATCAAGTTTACATAAAAAAAGCTATGGATGCTTATAACTAAAGACTTACGCACCAATAAATGTGAGATAGTAAATACTATATTGAAGATCTACTGCAAAAAGTCCTAAAATTTAAAAAATTAATGATGGTTAAAGTGGCTTTATAGCTTGCTTTAGACTATAATTAATTTTGGG # Right flank : GTTAACATAATATTATAGGCACAGAAAATCCCAACATTTTAACATAAATTGCGTGATATATTTAAAATATTAAATTAAACTAATCTTTTCAAAGTATTTACATAAAAAATTTTTTATGCTATTATTTATATAATTAATATTGTCGTGTAACCACAAAGGGCATGAGATAACTTATTTAATAGATAGGTTGCTCATGCTTTTTTTTGTGGTTAATATATTTTACTATACTAACCAAAATTAAATAAATTAAAAGTTGGTAATTATATAATTTGAAAGGGGATGGATTTTTAACATTAATCAATGAAGAAAAACTCTGTAAAATTATAAGAATCAGAGTTAGAAATTTTCGGGGGTGAATATAAATTATGAAAAGAATTGTAGCTAGTGTTTTATCAGCAGCAATGATTTTATCAACATTTGGAAATGTAACTTATGCTAAAGATTTAAAGCAGGAAGTTATAGAAACTAAAACATATCCACAAGTTCAAAGTTATACTGCA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATAAGGAATGTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //