Array 1 186197-185227 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAELMS020000009.1 Salmonella bongori strain 08-1209 08-1209-D00290-STE4673_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 186196 29 96.6 33 .............T............... CGTTGCGCCACCTGCATTTTTAGCTGAATCTGC 186134 29 96.6 33 .............T............... ATTTCCAATCTTTTTTTTCGCATCCTTCCTATC 186072 29 96.6 32 .............T............... ATCCGCGCCGAGTTGCGTAACCCCAAACCAGA 186011 29 96.6 32 .............T............... GACGGGCAAGTAGAGCAGGGTGTATCATATAA 185950 29 96.6 32 .............T............... GGGCTGAACCTCGATTTATTTAACACGTTTAT 185889 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 185828 29 100.0 32 ............................. TTTTTTAGCGATTCTGGCGTTAATGCCGACTG 185767 29 100.0 32 ............................. CCCGCAGCGAGCAGCCGGTATATCCGGATATT 185706 29 100.0 32 ............................. TAACGCAGCGCATAGCTGATAACACGGCTCTC 185645 29 100.0 32 ............................. CCAGCGCATTTTTCAGGAATGCGTCGAGGTGT 185584 29 100.0 32 ............................. TTTGGCTTCATACAGCAACCTCCTGTTCGTCG 185523 29 100.0 32 ............................. TCTGGCATGACACAAGGTGATTATGAGACATA 185462 29 100.0 56 ............................. CGAACCATATTAACCATTAGCATTCGGCCCAAAGTGTTCCCCGCGCCCTGCGTCGG 185377 29 96.6 32 ............T................ CGGAACTGGTTAACGAGGGCGAACACGCGCAA 185316 29 93.1 32 .............T.....A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 185255 29 79.3 0 .....................C.TTTA.T | ========== ====== ====== ====== ============================= ======================================================== ================== 16 29 97.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACAATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGACTAATG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202711-202194 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAELMS020000009.1 Salmonella bongori strain 08-1209 08-1209-D00290-STE4673_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202710 29 100.0 32 ............................. TCTTATATGCGCCGGATATGACGGGCACACAT 202649 29 100.0 32 ............................. AGACTCAGATATCACTCAAACAAAAAATATTA 202588 29 100.0 32 ............................. CGCGTAATTTTTCTAATTCTTTATTTAACTTA 202527 29 100.0 32 ............................. CGCTTAGAGTACGGACATGCTTACATTGCATT 202466 29 100.0 32 ............................. GTGTCATGCAACCTTAATTGTAGAGTATAACA 202405 29 100.0 32 ............................. GTGGAAATTAAGAAAATTAAAATGATCGATAG 202344 29 100.0 32 ............................. AATCTGCATTGCGGTAGGTACGTCGTTACCGC 202283 29 100.0 32 ............................. AGGATAAAAACGTTCCAATCGTTGAAATTACC 202222 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGCGCGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAATTCGAGGAATGTATAAAGTAGTTGAATAATTTTCCATAGCGAGACATGGATCACACTATTCTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCGGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGAAATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //