Array 1 477232-478418 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQP01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1816 NODE_2_length_712965_cov_61.4491_ID_3391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477232 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 477293 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 477354 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 477415 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 477476 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 477537 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 477598 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 477659 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 477720 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 477781 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 477842 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 477903 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 477964 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 478025 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 478086 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478147 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478208 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 478269 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 478330 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478391 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494589-496268 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQP01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1816 NODE_2_length_712965_cov_61.4491_ID_3391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494589 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 494650 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 494711 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 494772 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 494833 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 494894 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 494955 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 495016 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 495077 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 495138 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 495199 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 495260 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495322 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 495384 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495445 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495506 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495567 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495628 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 495689 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 495750 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 495811 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 495873 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 495934 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 495995 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 496056 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 496117 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 496178 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496239 29 93.1 0 A..............A............. | A [496265] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //